Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0621 |
Symbol | |
ID | 3580650 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 721840 |
End bp | 722643 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637684311 |
Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
Protein accession | YP_288682 |
Protein GI | 72161025 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.311083 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGTATCG CGAGATTCTC GGCCGGTGAT GACGTAGGTT TCGGCTTGGT CGATACCGAC GATGAGGGCA ACCAGTTCGT CACCCGGATG AAGAGCCACC CGTTGGTGGG GCCGATCCAG CTCACCGGAG AACGCACCAA ACTCGAAGAC GTGCGGCTGC TCTCCCCGAT CCTGCCCACC AAGATCGTGT GCATCGGCAA AAACTACGCC GACCACATCG CGGAGATGGG AGGCAGCGCT GAGGACGAAC GGGACCCCAA GGAGCCGGTC GTCTTCCTCA AGCCCTCCAC CGCCGTGGTC GGGCCCAACG ACCCCGTCTT CCACCCGAAA CTCTCCTCGC GGGTGGACTA CGAGGGAGAA CTGGCTGTGA TCATCGGCCG GCTCTGCCGG GAGGTGCCGG CCGAACGCGC CAAGGACGTC ATCTTCGGCT ACACCATCGG CAACGACGTC ACCGCCCGCG ACCTGCAGCA GGCCGACCAC CAGTGGACCC GCGCCAAGGG GTTCGACTCG TTCTGCCCGC TCGGACCGTG GATTGAGACC GGGCTCAGCG TTGAGGAAGC CTCGCAGCTG CGCATCACCA CCACCGTGGA CGGGGAGGTC CGCCAGGACG GCAACACCGG GCAGATGATC CACAGCATTC CCGAGATCAT CTCCTACGTG AGCTCTTTCA TGACGCTCCT GCCGGGGGAT GTGATCCTCA CCGGCACCCC CGCAGGGGTC GGACCGGTCC GGGTAGGCCA GCGGATGACC GTGGCGATCG ACCGGATCGG GGAACTGAGC AACCCGGTGG TGGCCCGCGA CTGA
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Protein sequence | MRIARFSAGD DVGFGLVDTD DEGNQFVTRM KSHPLVGPIQ LTGERTKLED VRLLSPILPT KIVCIGKNYA DHIAEMGGSA EDERDPKEPV VFLKPSTAVV GPNDPVFHPK LSSRVDYEGE LAVIIGRLCR EVPAERAKDV IFGYTIGNDV TARDLQQADH QWTRAKGFDS FCPLGPWIET GLSVEEASQL RITTTVDGEV RQDGNTGQMI HSIPEIISYV SSFMTLLPGD VILTGTPAGV GPVRVGQRMT VAIDRIGELS NPVVARD
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