Gene Tfu_0621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0621 
Symbol 
ID3580650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp721840 
End bp722643 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content65% 
IMG OID637684311 
Product5-carboxymethyl-2-hydroxymuconate delta-isomerase 
Protein accessionYP_288682 
Protein GI72161025 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.311083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGTATCG CGAGATTCTC GGCCGGTGAT GACGTAGGTT TCGGCTTGGT CGATACCGAC 
GATGAGGGCA ACCAGTTCGT CACCCGGATG AAGAGCCACC CGTTGGTGGG GCCGATCCAG
CTCACCGGAG AACGCACCAA ACTCGAAGAC GTGCGGCTGC TCTCCCCGAT CCTGCCCACC
AAGATCGTGT GCATCGGCAA AAACTACGCC GACCACATCG CGGAGATGGG AGGCAGCGCT
GAGGACGAAC GGGACCCCAA GGAGCCGGTC GTCTTCCTCA AGCCCTCCAC CGCCGTGGTC
GGGCCCAACG ACCCCGTCTT CCACCCGAAA CTCTCCTCGC GGGTGGACTA CGAGGGAGAA
CTGGCTGTGA TCATCGGCCG GCTCTGCCGG GAGGTGCCGG CCGAACGCGC CAAGGACGTC
ATCTTCGGCT ACACCATCGG CAACGACGTC ACCGCCCGCG ACCTGCAGCA GGCCGACCAC
CAGTGGACCC GCGCCAAGGG GTTCGACTCG TTCTGCCCGC TCGGACCGTG GATTGAGACC
GGGCTCAGCG TTGAGGAAGC CTCGCAGCTG CGCATCACCA CCACCGTGGA CGGGGAGGTC
CGCCAGGACG GCAACACCGG GCAGATGATC CACAGCATTC CCGAGATCAT CTCCTACGTG
AGCTCTTTCA TGACGCTCCT GCCGGGGGAT GTGATCCTCA CCGGCACCCC CGCAGGGGTC
GGACCGGTCC GGGTAGGCCA GCGGATGACC GTGGCGATCG ACCGGATCGG GGAACTGAGC
AACCCGGTGG TGGCCCGCGA CTGA
 
Protein sequence
MRIARFSAGD DVGFGLVDTD DEGNQFVTRM KSHPLVGPIQ LTGERTKLED VRLLSPILPT 
KIVCIGKNYA DHIAEMGGSA EDERDPKEPV VFLKPSTAVV GPNDPVFHPK LSSRVDYEGE
LAVIIGRLCR EVPAERAKDV IFGYTIGNDV TARDLQQADH QWTRAKGFDS FCPLGPWIET
GLSVEEASQL RITTTVDGEV RQDGNTGQMI HSIPEIISYV SSFMTLLPGD VILTGTPAGV
GPVRVGQRMT VAIDRIGELS NPVVARD