| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0614 |
|---|
| Symbol | |
|---|
| ID | 3581541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 711305 |
|---|
| End bp | 712891 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637684304 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_288675 |
|---|
| Protein GI | 72161018 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.86187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCAAGC CAGTCGTCCT GGTCGCGGAA GAACTTTCGC CCGCAGGAAT CGCGCTGTTG
GAAGAGGACT TTGAAGTCCG CCACGTCAAC GGCGCCGACC GTTCCCAGCT CCTTCCCGCG
CTCGCCGGAG TCGACGCGCT GATCGTGCGC AGCGCCACCA AAGTGGACGC TGAGGTGCTG
GCCGCGGCGC CCTCCCTCAA GGTTGTGGCG CGTGCGGGCG TCGGACTGGA CAACGTGGAT
GTCGAGGCCG CCACCAAGGC GGGCGTGCTC GTCGTCAACG CGCCCACCTC CAACATCATC
AGTGCAGCGG AACAGGCCAT CAACCTGCTC TTGGCCACGG CCCGCAACAC TGCTGCTGCC
CACGCGGCCC TCGTGCGCGG CGAGTGGAAG CGTTCCAAGT ACACCGGCGT CGAACTGTAC
GACAAAACCG TCGGCATCGT GGGCCTGGGA CGGATCGGCG TGCTCGTCGC CCAGCGGCTC
CAGGCGTTCG GCACCAAGCT GATCGCCTAC GACCCCTTCG TGCAGCCTGC CCGGGCCGCG
CAGCTGGGGG TGGAGCTCGT CGAGCTCGAC GAGCTGCTGG AGCGCAGCGA CTTCATCACG
ATCCACCTGC CCAAGACGAA GGACACGATC GGCCTGATCG GCGAGGAAGA GCTGCGCAAG
GTCAAGCCGA CGGTCCGGAT CATCAACGCT GCGCGCGGCG GGATCGTGGA CGAGACGGCC
CTCTACCACG CGCTCAAGGA AGGTCGTGTG GCCGGCGCTG GGCTGGACGT GTTCGCCAAG
GAGCCTTGCA CGGACAGCCC GCTGTTCGAG CTGGAGAACG TGGTGGTGGC TCCGCACCTG
GGGGCCAGCA CGCACGAGGC GCAGGAGAAG GCCGGGACCC AGGTGGCCCG GTCCGTCAAG
CTTGCGCTCG CCGGCGAGTT CGTGCCGGAC GCGGTCAACA TCCAGGGCAA GGGCGTGGCC
GAGGACATCA AGCCGGGGCT GCCGCTGACG GAGAAGCTCG GCCGTATCCT CGCCGCGCTC
GCCGACGGTG CGATCACCCG GGTCGAGGTG GAGGTCCGGG GCGAGATCGT CGCCCACGAC
GTCAAGGTGA TCGAGCTGGC CGCGCTCAAG GGCCTCTTCA CGGACATCGT GGAAGAGGCT
GTGACCTACG TGAACGCGCC TCTGGTAGCC AAGGAGCGCG GTATCGAGGT GAGCCTGACC
ACCGAGGAGG AGAGCCCCGA CTGGCGCAAC GTCATCACGG TGCGGGCCAT CCTCTCCGAC
GGCCAGCGCG TGTCGGTCTC GGGCACGCTG ACCGGGCCGC GCCAGTTGGA GAAGCTTGTC
GAGGTCAACG GCTACACCAT GGAGATCGCG CCCAGCGAGC ACATGGCGTT CTTCTCCTAC
CACGACCGTC CCGGTGTGGT CGGCGTAGTC GGCCAACTGC TCGGACAGGC GCAGGTGAAC
ATCGCCGGCA TGCAGGTCAG CCGGGACAAG GAGGGCGGTG CGGCGCTGAT CGCGCTGACC
GTGGACTCGG CGATCCCCGA CGAGACCCTC GAGACGATCT CCAAGGAGAT CGGCGCCGAG
ATCAGCCGCG TGGACTTGGT TGACTGA
|
|---|
| Protein sequence | MPKPVVLVAE ELSPAGIALL EEDFEVRHVN GADRSQLLPA LAGVDALIVR SATKVDAEVL
AAAPSLKVVA RAGVGLDNVD VEAATKAGVL VVNAPTSNII SAAEQAINLL LATARNTAAA
HAALVRGEWK RSKYTGVELY DKTVGIVGLG RIGVLVAQRL QAFGTKLIAY DPFVQPARAA
QLGVELVELD ELLERSDFIT IHLPKTKDTI GLIGEEELRK VKPTVRIINA ARGGIVDETA
LYHALKEGRV AGAGLDVFAK EPCTDSPLFE LENVVVAPHL GASTHEAQEK AGTQVARSVK
LALAGEFVPD AVNIQGKGVA EDIKPGLPLT EKLGRILAAL ADGAITRVEV EVRGEIVAHD
VKVIELAALK GLFTDIVEEA VTYVNAPLVA KERGIEVSLT TEEESPDWRN VITVRAILSD
GQRVSVSGTL TGPRQLEKLV EVNGYTMEIA PSEHMAFFSY HDRPGVVGVV GQLLGQAQVN
IAGMQVSRDK EGGAALIALT VDSAIPDETL ETISKEIGAE ISRVDLVD
|
|---|
| |