| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0604 |
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| Symbol | |
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| ID | 3581531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 695207 |
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| End bp | 697309 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637684294 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_288665 |
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| Protein GI | 72161008 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATC CCACCAGCAC CCGGGATGTC GGCCCCCGGG TCGGGACGCC GCTGTGGCTG
TACTTCGCCA GTACCACGGT GGCCGGTTGC GTTCTCCTCG TCGTGTCCCT GATCTGGCTG
AGGGCTGACC GACTCCAGGT GTTCGCTACC GAGCCGCTCG TGTGGGTCCT GCTGTGCATG
GTGATCATCG GAGAGTTGCG TCCTATCGCC GCGCAGCGGC CCACGGGCGG GAACGCCCCT
ACGTCCCTGC CGTTCTCCTT CGCCCTCGTC ATCTACCACG GCCTGCCGAT CGCCGGGCTG
GTCCAGGCCG TGGGCTCCCT CCTGGCAGGG GTCACGCGCG GACAGGAGCC GCACCGCATC
GCGTTCAACA TCGCCCAGTA CACGCTGAGC TTCGGGGTCG CGGACGCTGT CATCCAACTG
GCCTACCCCC GCACCCCCCT CGTGCCGTGG GTGCCGCAGG GGTCGGGGCT GGTGATGGTC
GTCCTGGCCG CGGGCGCCTA TTTCGTCACC AACCTGCTGC TGGTCGAGTG CGCGGTCGCC
ATGCACGAGC GCATCCCGCT GCACCGGGTG CTGATGAAGG ACCTCGGCTA CCGCCTCTTC
GTCGCCGGGG TCCTCCTCAG CTTGGCGCCG CTCGTCGTCA TCGCCATGGC GCACTCGATC
TGGCTGGTGC CGCTGTTCTT CTTCCCGCTT GCCGCGCTGT ACAGCAGCGC CTCCCTGTCG
GTGAAGCGCG AATACCAGGC CAACCACGAC GAACTCACCG GCCTGGCCAA CCGCAAGCTG
CTGATTCTGC GCACCCAGGA GGCGCTCAGC GAAGCCCAGG AGCGCCGGCA GTGCGTCGGA
CTCCTCCTGC TGGACCTCGA CCGTTTCAAA GAAGTCAACG ACACCCTGGG CCACCCCACC
GGCGACCGGC TGCTGCAGAC CGTCGCCTAC CGCCTCACCC ACAGCGTGCG CCCCGGAGAC
CTGGTGGCCC GGCTCGGCGG GGACGAGTTC GCGGTGCTGC TGCCCCAGGT GCGGGACGCG
GCTTCGGCCC GCGAAGTCGC GGCGCGGCTG CGGGTCGCTT TGGCGGAACC CCTGCGCCTG
GACGGGATGG ACTTCGACCT GGAAGCCAGC ATCGGCATCG CGCTCTACCC CGACCACGCC
CCCGACTTCG AACTGCTGAT GCAGCGCGCC GACGTGGCCA TGTACGTGGC CAAGGAACAG
CGCACCGGGG TGGAGCTGTA CGCTCCGCAC AAGGACCGGA ACTCCGCGGC CCGGTTGAGC
CTGTTCGGGG AACTGCGCCG CGCCCTCATC GAAAACGAGC TGGAGATGTT CTACCAGCCG
ATCGTCGCGC TGGCCGATGA GCGCGTGGTC GCGCTGGAAG CCTTGGTGCG CTGGCGGCAC
CGCCGGAGGG GGATCCTCCC GCCGGAGGAG TTCGTCCCCA TGGTGGAACA GTCCTATCTG
ATGCGGAGCT TCACCCACGA GGTCATCGAG CAGACGTGCG CGCAGGCTGC CCGCTGGTGG
AGCGAGGGCA TCACCCTGCC CGTGGCGATC AACCTGTCTG CCCGGGAGCT GCTGGACCCG
ACCCTGCCGG AGAGCATCGA ATCCGGGCTG CGGCGGTACC GGCTCCAGCC GAAGGCCCTG
CGGCTGGAGA TCAGCGAACG CGCCCTGGTC TCGGACGCGG AAGCGATCAT TCCCGCCATC
ATGTCCCTTG CGGAGCTGGG AGTCACGGTC GCGTTGGACG ACTTCGGCAC CGGCTATTTC
ACCTTGGCCC GCCTCAACGG CCTGCCCGTC GGGGAAGTCA AGGTGGACGG GTCGTTCGTC
CGCCACGTGA TCGATGATTC CGACAGCAAG GTGGTCGTAG AAGCCGCTGT GGACCTGATG
AACACGCTGG GACTGCGGGC TATCGCCGAA GGGGTGGAGA ATGCGGAGCA GGTCGAAGCG
GTCCGCGCCC TCGGCTGCTA TGCGGCCCAG GGCCGGTACT TCACCCCGCC GCTGGATGCG
GGTGCGGTCA CCGGATGGCT GCTGGAGCAT GGTGACTTGG CGATCTCGCC GTCGGCGAGC
AGCACCGGGA CATCCTGGCC GCACAGCGGA ATGAGACCAC CGACCACCCC GCAGCAGCCA
TAG
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| Protein sequence | MKDPTSTRDV GPRVGTPLWL YFASTTVAGC VLLVVSLIWL RADRLQVFAT EPLVWVLLCM
VIIGELRPIA AQRPTGGNAP TSLPFSFALV IYHGLPIAGL VQAVGSLLAG VTRGQEPHRI
AFNIAQYTLS FGVADAVIQL AYPRTPLVPW VPQGSGLVMV VLAAGAYFVT NLLLVECAVA
MHERIPLHRV LMKDLGYRLF VAGVLLSLAP LVVIAMAHSI WLVPLFFFPL AALYSSASLS
VKREYQANHD ELTGLANRKL LILRTQEALS EAQERRQCVG LLLLDLDRFK EVNDTLGHPT
GDRLLQTVAY RLTHSVRPGD LVARLGGDEF AVLLPQVRDA ASAREVAARL RVALAEPLRL
DGMDFDLEAS IGIALYPDHA PDFELLMQRA DVAMYVAKEQ RTGVELYAPH KDRNSAARLS
LFGELRRALI ENELEMFYQP IVALADERVV ALEALVRWRH RRRGILPPEE FVPMVEQSYL
MRSFTHEVIE QTCAQAARWW SEGITLPVAI NLSARELLDP TLPESIESGL RRYRLQPKAL
RLEISERALV SDAEAIIPAI MSLAELGVTV ALDDFGTGYF TLARLNGLPV GEVKVDGSFV
RHVIDDSDSK VVVEAAVDLM NTLGLRAIAE GVENAEQVEA VRALGCYAAQ GRYFTPPLDA
GAVTGWLLEH GDLAISPSAS STGTSWPHSG MRPPTTPQQP
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