| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0603 |
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| Symbol | ligA |
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| ID | 3581530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 692677 |
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| End bp | 694872 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637684293 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_288664 |
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| Protein GI | 161723110 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGCAC CAGACCCGAC CTTCTCTGAC GACGTCCCCG CTGACGTGCG GGAAAGGCAC
GCCCGGCTGA GCCAGGATCT CGACGACTAC AGCTACCGCT ACTACCTCGG CTCGCCGATC
ATCTCCGATG CCGAGTACGA CCAGTTGATG GCGGAGCTGC GGGACCTGGA AGCCCAGTAC
CCGTCCCTGG TGACCCCTGA TTCGCCCACC CAGAAGGTGG GCGCGCCCAT CAGCAACGAG
TTCGCTCCCG TAGAGCACCT GGAGCGGATG CAGAGCCTCG ACAACGCGTT CAGCGACGCG
CAGTTGGAGG CGTGGGCGCA CCGGGTCAGC GCGGAAGTCC CGGTTGACGC GTTCCTGTGC
GAGCTCAAAA TCGACGGTCT CGCCGTGGCC TTGGTGTATG AGAAGGGGCG CCTGGTGCGT
GCCGCCACCC GGGGAGACGG CCGGATCGGG GAGGACATCA CCCTCAACAT CCGCACCATC
GACACGGTGC CGCTCCGCCT GGACGAGTCC CGCTATCCCG CGCCCGAACT GCTTGAGGTG
CGCGGTGAAG TGTTCCTGCC GGTCAAGGCA TTCGAACAGC TCAACTCCCG GCTCGCTGAC
GAAGGCAAGC CCCCGTTCGC CAACCCCCGC AACGCCGCGG CCGGGTCCCT GCGGCAGAAG
GACCCGCGGG TCACCGCGTC CCGGCCGTTG AGCATGCTGG TGCACGGGAT CGGCGCGCAC
CGCGGGGTGA CCATCACCCA CCAGTCGCAG TCCTACGAGC TGCTGGCCGC ATGGGGACTG
CCGGTCAGCG ACCGGATCCG GGTGGTCTCC ACCCTGGACG AGGTGCGCGA ATATATCGCC
TACTACGCGG AGCACCGCCA CGACCCCGAA TACGAGATCG ACGGGGTCGT CGTCAAAGTC
GACGATGTCT CCCTGCAGCG CCGCCTCGGC TCCACCAGCC GGGCCCCGCG GTGGGCGATC
GCCTACAAGT ACCCGCCCGA GGAAGTGACC ACCAAGCTGC TCGACATCAA AACCAGTGTG
GGCCGCACCG GGCGGGTGAC CCCCTATGCG GTGCTGGAGC CGGTGAAGGT CGCCGGATCC
GAAGTCGAGT TCGCCACCCT GCACAACGCC CAGGAAGTGG CCCGCAAAGG CGTGCTGATC
GGCGACACCG TGGTGGTCCG CAAAGCCGGG GACATCATCC CGGAGGTCGT GGGCCCGGTG
GTGGAGAAGC GCACCGGCAC CGAGCGGCCG TTCGTGATGC CCACCGAGTG CCCCGAGTGC
GGCAGCCCGC TCGGCCAGCA GAAGGAAGGC GACGTCGACC TGCGCTGCCC CAACACCCGC
TACTGCAAAG GGCAGTTGCG GGAGCGGCTC GCGTTCATCG CCGGACGCAA AGCCCTCGAC
ATTGAAGCCC TGGGCTACGT GGCGGCCACC GCCCTCACCC AGCCGTTGGA GCCGGCCGAA
CCGCCGCTGC GGGACGAAGG CGACCTGTTC AGCCTGACGG TTGAGCAGTT GCTGCCGATC
CGCACGCTTG TCCTCGACCC GGACACCGCC GAGCCGAAGA TCGACCCGAA GACCGGCAAA
CCCAAGGTGG TGAGCTTCTT CGCTAACCAG AAGGGCGAGC CGAAGAAGAT CGTCGAGAAG
CTGTTCCAGC AGCTGGAGGA AGCGAAGAAG CGTCCGCTGT GGCGCGTGCT GGTCGCCCTG
TCCATCCGGC ATGTGGGCCC GCGCGCTGCC GAGGACCTTG CCCGCCACTT CCGCTCCTTG
GATGCTATTG CTCAGGCCAG TGAGGAGGAG CTGGAGGCAG TCGAGGGGAT CGGTCCGACC
ATTGCCCGGT CCATCGTCGA CTGGTTCTCC GTGGACTGGC ACCGTGAGAT CGTGGAGAAG
TGGCGGGCCG CAGGGGTCCG CATGGAGGAG GAGGGCGCCG ACGATGGTCC CCGCCTGCTG
GACGGCATTA CCACGGTGAT CACCGGCACA CTGGAGAAGT ACAGCCGGGA CGGAGCGAAG
GAGGCGGTGC AGAAGCTCGG TGGCAGGGTC ACCGGGTCGG TGTCCAGGAA GACTGACTTC
GTCGTGGTCG GAGCAAACCC CGGTTCGAAG TACGACAAAG CTGTGAAGCT GGGGGTGCCG
ATCCTTGACG AGGCAGGGTT CGAGGTGTTG CTCACTCAAG GTCCGGAAGC GGCCAGGGCA
GCCCGTCTCT CCGAGGATGA ATCCGTCCTG AGCTGA
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| Protein sequence | MSAPDPTFSD DVPADVRERH ARLSQDLDDY SYRYYLGSPI ISDAEYDQLM AELRDLEAQY
PSLVTPDSPT QKVGAPISNE FAPVEHLERM QSLDNAFSDA QLEAWAHRVS AEVPVDAFLC
ELKIDGLAVA LVYEKGRLVR AATRGDGRIG EDITLNIRTI DTVPLRLDES RYPAPELLEV
RGEVFLPVKA FEQLNSRLAD EGKPPFANPR NAAAGSLRQK DPRVTASRPL SMLVHGIGAH
RGVTITHQSQ SYELLAAWGL PVSDRIRVVS TLDEVREYIA YYAEHRHDPE YEIDGVVVKV
DDVSLQRRLG STSRAPRWAI AYKYPPEEVT TKLLDIKTSV GRTGRVTPYA VLEPVKVAGS
EVEFATLHNA QEVARKGVLI GDTVVVRKAG DIIPEVVGPV VEKRTGTERP FVMPTECPEC
GSPLGQQKEG DVDLRCPNTR YCKGQLRERL AFIAGRKALD IEALGYVAAT ALTQPLEPAE
PPLRDEGDLF SLTVEQLLPI RTLVLDPDTA EPKIDPKTGK PKVVSFFANQ KGEPKKIVEK
LFQQLEEAKK RPLWRVLVAL SIRHVGPRAA EDLARHFRSL DAIAQASEEE LEAVEGIGPT
IARSIVDWFS VDWHREIVEK WRAAGVRMEE EGADDGPRLL DGITTVITGT LEKYSRDGAK
EAVQKLGGRV TGSVSRKTDF VVVGANPGSK YDKAVKLGVP ILDEAGFEVL LTQGPEAARA
ARLSEDESVL S
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