| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0597 |
|---|
| Symbol | mnmA |
|---|
| ID | 3580171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 686385 |
|---|
| End bp | 687476 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637684287 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_288658 |
|---|
| Protein GI | 72161001 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTGC GAGTATTGGC CGCCATGTCG GGCGGCGTGG ATTCCGCCGT GGCCGCCGCA
CGGGCCGTCG AGGCCGGGTA CGACGTCACC GGCGTGCACC TGGCGTTGTC GTCCAACCCC
CAGTCGTATC GGACGGGGGC ACGTGGCTGC TGCACGATCG AGGACTCTCG GGACGCCCGC
CGGGCTGCCG ACGTGATCGG TATCCCGTTC TACATCTGGG ACATGGCCGA AGAGTTCGAC
CGCGACGTGG TGCAGGACTT CGTCGCCGAG TACGCGGCCG GCCGCACCCC CAACCCCTGC
CTGCGCTGCA ACGAGAAGAT CAAGTTCCAG GCGGTGTTGG AGCGGGCTCT GGCTCTCGGC
TTCGACGCGG TGTGCACGGG GCACCACGTG CGTTTGGAGA ACGGCCGGCT GCGGCGGAGT
GTCGACGCGG TCAAGGACCA GTCGTACGTG CTGGCGGTGC TCACCCGCGA GCAGCTCGCC
CACGCCATAT TCCCGTTGGG TGACTGCACG AAGGAGGAGG TGCGGGCCGA GGCTGCGCGA
CGCGGGCTCA CCGTGGCGGA CAAGCCGGAC AGCCACGACA TCTGCTTTAT CGCGGACGGG
GACACGAGCG GTTTCCTGGA ACGCCGGCTC GGCAGCAACC CGGGTCCCAT CGTGGACGAG
ACCGGCCAGG TGGTCGGCGA GCACCGGGGA GCGCACGCGT TCACTGTCGG CCAGCGCCGC
GGGCTCAACC TGAGCGGTGC CCCCCACCGC CGGTATGTCC TGTCGATCGA ACCGGTGAGC
AACACAGTGC GGGTGGGGCC GCGCGAGGCG CTCCAGGTGG ACCGTATCGT CGGGGAGCGT
CCCGTGTGGT CGGGGTGTGA GCCGCCGGAG GAGTGGACGC CGTTCCTCGT CCAGCTGCGG
GCCCATGGCG AGGTGTACTC CTGCCGGGCA CGGCAGTACG AGGGGCGGGT CGAGATCCTG
CTGGACGAGC CAGCGCTCGG CGTGGCGAAG GGGCAGGCAG CGGTGTTGTA CGACGGCGAC
GTAGTGATGG GCTCGTCGAC GATCGCTGAA ACCTCCCGGG TGGAGCAGGC GGCAGCGAAC
CACGCCGAAT GA
|
|---|
| Protein sequence | MTLRVLAAMS GGVDSAVAAA RAVEAGYDVT GVHLALSSNP QSYRTGARGC CTIEDSRDAR
RAADVIGIPF YIWDMAEEFD RDVVQDFVAE YAAGRTPNPC LRCNEKIKFQ AVLERALALG
FDAVCTGHHV RLENGRLRRS VDAVKDQSYV LAVLTREQLA HAIFPLGDCT KEEVRAEAAR
RGLTVADKPD SHDICFIADG DTSGFLERRL GSNPGPIVDE TGQVVGEHRG AHAFTVGQRR
GLNLSGAPHR RYVLSIEPVS NTVRVGPREA LQVDRIVGER PVWSGCEPPE EWTPFLVQLR
AHGEVYSCRA RQYEGRVEIL LDEPALGVAK GQAAVLYDGD VVMGSSTIAE TSRVEQAAAN
HAE
|
|---|
| |