Gene Tfu_0570 details

Gene Information

• Locus tag: Tfu_0570
• ID: 3581268
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 647955
• End bp: 651344
• Gene Length: 3390 bp
• Protein Length: 1129 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637684260
• Product: membrane carboxypeptidase (penicillin-binding protein)
• Protein accession: YP_288631
• Protein GI: 72160974
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0744] Membrane carboxypeptidase (penicillin-binding protein)

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGGGG GCGACGAACT GAGCGAGAGC AGTAGAGGCG ACACCACTCC GCGCCCTGAG 
ACCGAGGAAG CGACTGTCGC CGATTCTTCC GTAACGAACG ACGATGTGAG CGTCGACGAG 
TCTGGCGTTG ACGCTCGTGC TGACGATGTC GACGACGGGA GCGAACCCGA ATGGTTCGCT 
TCCGCTGGGG AATCCCCTTA CCTCGAGGCC AGCGCGTTCA AAGACAGCGG CAGTTTCTTT 
AGAGACAAGG TTGCCCGCAG CCTGGCCGAA GAGTACGGGA TCGATCTCGA CGACGCCGGA 
GACCAGACCG CGGACTCCGC AGCCAGTAGC GGAGCAGACG GCCAGCAGGC CCAGGACGCA 
GACACGCATG CCGGGACCGC GTCTCCCGCC GAGGACACCG ACCAGGCTGC AGCGGCTGCG 
GCTGGTGCAG AGGAGGACGA GGAGGCGACG GAGCAGCTCC GCCCGGCTGA TGCTGTGGGC 
GGCGATTCTG GTGGTCTTGA TGAGGCCACG GTGCAGATAA CCCCGACAGA TGCGGCGGAT 
GCGTCTGCGG TGGACGAGGA AGGGACCACT GAACGGCTCA GCCCGCCGTC CTCCTCCGGC 
CCCGGGGCAG ACGACGAAGC CACCGAACAG ATCAACCTGC CGTCGTCGGC CGCGGCGGAC 
GACGAAGAGA CCACGGAGCG GCTCAGTCCG TCTGCTGCAC GAGCGGGAGA CGACGAGGCC 
ACGGAACGGC TTGATGTGCC AGCCTCCTCT ACCGCGGTGG ATGCGGAGGA GGCGACGGAG 
CAGCTCCGCC CGGCTGATGC TGTGGGCGGC GATTCTGGTG GTCTTGATGA GGCCACGGTG 
CAGATAGCCC CGGTAGGTGC GGTGGATGCG GAGGAGACCA CCGAACGGCT CAGTCCGTCT 
GCTGCACGAG CGGGAGACGA CGAGGCCACG GAACGGCTTG ATGTGCCAGC CTCCTCTGCC 
ACGGTGGATG CGGAGGAGAC CACCGAACGG ATCAGCCCCG TCACCCCCAC CGGTCACGGC 
AGCGGCGAAG AGACCACGGT CCAGCTCTCC CCGGTAGAGG CAGCGCAGAG CCAGGCCGCA 
CCCTCCACGA CCGACCCCTC CGAGAGCACC AAGCTCGAAA CCACCGCGGT CCTCCGCGAG 
AACCTGAAAT CGCGGCTCCG GAAGCGCCCC CTCCGTCCGC GGTTCCGGAA GTCGGCTGCT 
GCCGCAGGCG GTGTGGGACC CGCCAGTCCG CCTCCCCCCA CCGCCCCGTC GGGAACCTCG 
CACTCCAGCG GCCCCGCGGA GAAGAAGGCA CCAGCGAAGA AAACCAAGCG GAAGAAACCG 
TTGTGGTGGC GGATCACCCG CGCCGGACTG ATCGTCATCG TGCTGCTCGT GGGGCTGGTG 
ACCGGCGCAT TCGCCTACGC CTACTCGATG TTCGAGGTCC CCGACGCAGC CCAGGCCGAC 
GCGACTGCGC AGGGCTCCAT CTTCTACTAC GCCGACGGAT CAGTCCTCAC CGAACGCGGC 
GTCAACCGTA AACCGGTCTC CCTCGACGAG GTTCCCGAGC ACGTCCAGAA CGCCATCCTC 
TCCGCGGAGA ACCGCGGGTT CTGGGACGAG CCGGGCGTGT CCATCACCGG TACGGCGCGT 
GCGGTGTGGT CCACCGTCAC TGGAAAGCAG CTCCAGGGCG GATCCACCAT CACCCAGCAG 
TTCGTCCGCA ACTACTACGA AGGGCTCAGC CAGGAGCAGA CCATCGAGCG CAAACTCAAG 
GAGATCATCA TCGCGCTCAA GGTCGACCGC TCCCAGAGCA AGGAGTGGAT CCTGGAGCAG 
TACCTCAACA CCATCTACTT CGGACGGAAC GCCTACGGCA TCCAGGCGGC CGCGGAAGCC 
TACTACGACA AGGATGTCGG CGACCTCACG CCGGATGAGG CGGCGTTCCT CGCCGCAGCC 
ATCCAGCAGC CCACCAAGTT CGGCTTCGCG GACAGCGACA CCACTCCTGA GATGGAGAGC 
CGCTGGCAGT ACGTGGTCAA CGGCCTGGTG GACATGGGGT CGATCACTGA AGCCGAGGCG 
GCAGAGTACA AGTTCCCCAA ACCCCTGCCG GAACGGCCGC AGGACAACAT CGACCTCAGC 
GGCTACAAGG GCTACATGTT CCAGCAGGCC ATGAAGGAGC TGGAGGAGCT CGGCTACACC 
GAGGACAACA TCAACCGGGG TGGCTACGAG ATCCACACCA CCTTCGACCC CAAGCTGATG 
GAGCTGGCCT ACGAAGCCGT GCAGGAGACC GTGCCCATCG ACGACCTCCC CGAAGGGGTG 
CGGGTCGGGC TCAGCGTGGT CGATCCGAAG ACCGGCGGGG TGCTGGCCTT CTATGGCGGA 
GAGGACTACT TCGAGAACCA GTACGACAGC GCGTTCCTCG GCACCGCGCA GGCAGGGTCG 
GCGATGAAGC CGTACGTGCT GGCCGCAGCC CTCAAGGAAG GGTTGAGCCT GCACACGGTG 
GTGGACGGCC GCGGCCCCCG GTACATCAAC GGCACGCGGA TCCAGAACGC GGGCAACGCC 
CCCGGTGGTC CGATGAACCT CATCCAGGCC ACCGCGGTCT CCAACAACCT CGGCTACATC 
GACCTCGCTC AGCGGGTCGG ACTGGAGAAG GTCGCGGAAA CCGCCTACGC CATGGGGCTG 
CCCGAAGGAA GCATCGACCT GGTGCCGGTG CTGCCGTTGG GCGCCAACAG TGTGAGCCCC 
ACCGACCAGG CGGGCGGCTA CGCGACTTTC GCCAACGGCG GCGAACACAT CGAGACCCAC 
GTGGTCGCTT CCATCATCAA CAAGGAAGGT GAAGAGGAAC GCCCCGAGCC GAAACGCAAC 
CGGGTGCTCA CCAAGGAGCA GGCAGCAGAC GCCACCTACG CAATGCGCCA GGTGATCACC 
TCCGGTACCG GAACGGCCGC CAACATTGGG CGTCCGGCAG CGGGCAAGAC CGGGACCACC 
GACGGAAGCG TGGCCGCCTG GTTCGTCGGC TACACCCCGC AATTGTCTGC CGCGGTGGGC 
ATCTACAGCG GCGACAACCA GAGGTTCTAC GTGCCGGGCT GGGGCACCCT GTCCGGCGGT 
ACGCTCCCGG CGACCGTGTG GCGCACGTTC ATGCAGAAGG CGCTGGCGGA CAAGCCGGTG 
GAGGACTTCC CGTCGCCCTC GTTCGGCGGA TCCGCGCAGA ACTGGGCGCC CCAGCCGGAG 
CCGAGCACGC CTGCGGACAC CCCGCAGGAC CAGGGCCCGA ACCAGGACGG CCTGAACCCG 
GCGCCCGAGC CTGAAGTACC GCAACCGGCT CCCGAACCTG TGGTGCCTGA GCCTGTGGTG 
CCCGAACCGG TTGTTCCGGA ACCCGTGGTG CCCGAGCCGG GAGGCCCGGA TCCTGGTTTC 
CCAGGAGGGG GGCTACCTCC GTCAGGCTGA 

 

Protein sequence

MPGGDELSES SRGDTTPRPE TEEATVADSS VTNDDVSVDE SGVDARADDV DDGSEPEWFA 
SAGESPYLEA SAFKDSGSFF RDKVARSLAE EYGIDLDDAG DQTADSAASS GADGQQAQDA 
DTHAGTASPA EDTDQAAAAA AGAEEDEEAT EQLRPADAVG GDSGGLDEAT VQITPTDAAD 
ASAVDEEGTT ERLSPPSSSG PGADDEATEQ INLPSSAAAD DEETTERLSP SAARAGDDEA 
TERLDVPASS TAVDAEEATE QLRPADAVGG DSGGLDEATV QIAPVGAVDA EETTERLSPS 
AARAGDDEAT ERLDVPASSA TVDAEETTER ISPVTPTGHG SGEETTVQLS PVEAAQSQAA 
PSTTDPSEST KLETTAVLRE NLKSRLRKRP LRPRFRKSAA AAGGVGPASP PPPTAPSGTS 
HSSGPAEKKA PAKKTKRKKP LWWRITRAGL IVIVLLVGLV TGAFAYAYSM FEVPDAAQAD 
ATAQGSIFYY ADGSVLTERG VNRKPVSLDE VPEHVQNAIL SAENRGFWDE PGVSITGTAR 
AVWSTVTGKQ LQGGSTITQQ FVRNYYEGLS QEQTIERKLK EIIIALKVDR SQSKEWILEQ 
YLNTIYFGRN AYGIQAAAEA YYDKDVGDLT PDEAAFLAAA IQQPTKFGFA DSDTTPEMES 
RWQYVVNGLV DMGSITEAEA AEYKFPKPLP ERPQDNIDLS GYKGYMFQQA MKELEELGYT 
EDNINRGGYE IHTTFDPKLM ELAYEAVQET VPIDDLPEGV RVGLSVVDPK TGGVLAFYGG 
EDYFENQYDS AFLGTAQAGS AMKPYVLAAA LKEGLSLHTV VDGRGPRYIN GTRIQNAGNA 
PGGPMNLIQA TAVSNNLGYI DLAQRVGLEK VAETAYAMGL PEGSIDLVPV LPLGANSVSP 
TDQAGGYATF ANGGEHIETH VVASIINKEG EEERPEPKRN RVLTKEQAAD ATYAMRQVIT 
SGTGTAANIG RPAAGKTGTT DGSVAAWFVG YTPQLSAAVG IYSGDNQRFY VPGWGTLSGG 
TLPATVWRTF MQKALADKPV EDFPSPSFGG SAQNWAPQPE PSTPADTPQD QGPNQDGLNP 
APEPEVPQPA PEPVVPEPVV PEPVVPEPVV PEPGGPDPGF PGGGLPPSG