| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0486 |
|---|
| Symbol | |
|---|
| ID | 3579628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 554504 |
|---|
| End bp | 555364 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637684174 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_288547 |
|---|
| Protein GI | 72160890 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2120] Uncharacterized proteins, LmbE homologs |
|---|
| TIGRFAM ID | [TIGR03445] 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.522878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACC GTCGCCTGCT GCTGGTGCAC GCCCATCCTG ACGACGAAAC CATCGTCACC
GGGGCGACCA TGGCCCGATA CGCGGCCGAG GGAGCCCACA TCACGCTTGT GACCTGCACC
CTCGGTGAAG AAGGGGAAGT GATCCCCCCG GAACTGGCCC ATTTGGCGAG TGACCGGGAA
GGCGGACTAG GCGAGTACCG TGTGACGGAA CTCGAACGCG CCTGCGCCGC ATTGGGTGTC
CACGACCAGC GGTTTCTGGG CGGCAAGGGG CGCTACCGCG ACTCAGGCAT GATGGGTGCC
CCCACGAACA GCCACCCCGC GTGCTTCTGG CAGGCCGACG TGGACACGGC CGCCCACGAA
CTCGCCGCGA TCATCCGGGA AGTGCGCCCC CAAGTCATCG TCACCTACGA CGACAACGGC
GGCTACGGGC ACCCCGACCA CATCCAAGCG CACCGGGTGA CCATGCGCGC CTTCGCTCAA
GCCGCGGACC CCTCCCTGCC GGGCACCCCC TGGCAAGCCC GCAAGCTGTA TGCGATCGCC
CAGCCCAGGA AGCTGCTGGA AGAGTCAGTG GCACGCATGC AAGCCGACCC GGGCCCGTTC
ACCGCGCCCA CCGCGGTGGA GGACATCGCC CCCGGCACCC CGGACGACCT GGTGACCACC
CGCATCGACG GCTCCGCCTA CTGGGAGAAG AAGCGGGACG CTCTGCAGGC GCACGCCACC
CAGGTCGCTG TGGCGGGCAC CCGGTTCGCG CTCTCCAACG GCATCGCCCA GGAGATCCAC
GCCGTGGAGT ACTTCACCCT GCTGCACGGC CCGGAACCCC GCCGCGGCCC CGATGGCTAC
GAAACCGACC TGTTCGCCTG A
|
|---|
| Protein sequence | MNDRRLLLVH AHPDDETIVT GATMARYAAE GAHITLVTCT LGEEGEVIPP ELAHLASDRE
GGLGEYRVTE LERACAALGV HDQRFLGGKG RYRDSGMMGA PTNSHPACFW QADVDTAAHE
LAAIIREVRP QVIVTYDDNG GYGHPDHIQA HRVTMRAFAQ AADPSLPGTP WQARKLYAIA
QPRKLLEESV ARMQADPGPF TAPTAVEDIA PGTPDDLVTT RIDGSAYWEK KRDALQAHAT
QVAVAGTRFA LSNGIAQEIH AVEYFTLLHG PEPRRGPDGY ETDLFA
|
|---|
| |