| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0424 |
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| Symbol | |
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| ID | 3579948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 475896 |
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| End bp | 479528 |
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| Gene Length | 3633 bp |
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| Protein Length | 1210 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637684111 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_288485 |
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| Protein GI | 72160828 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCACG TTCTGCGCCC ATTGCGAGCG GGCCGTCCAT CGTCACACGC CCCACCTGGT
GATATGAGCC TTAATGGACT TCTCTCTGTC GTCACCGGCG ACCCAGCCCT GAAGCGAGCG
ATCGAGACCG CACGCAACGG CCACGATCCC CTCCTCGACC TTGTCGCGCC GCCGTCGGTG
CGCCCGTTGA TCGTGGCTGG CCTCGCGGCC GACGCTCCGG TGGGAGCGGG ACGTCCCGTG
CTGGCGCTGA CCGCCACGGA GCGTGAGGCC GCTGATCTGA ACAGTGCCCT GGGGTCGCTG
CTGCCGGCCG ACTCGGTGGC GCTGTTCCCC GCGTGGGAGA CCCTGCCGCA CGAGCGCCTC
TCCCCCCGCT CCGACACGGT GGGGCAGCGG TTGGCGGTCC TGCGCCGCCT GACCCACCCG
GATCCCGACG ATCCGCTCAC CGCACCGCTG CGGGTCGTGG TCGCCCCCAT CCGGTCCGTG
CTGCAGCCGC TGGTCTCCGG GCTGGGTGAC CTCCAGCCGG TGCGTGTGCG GGAAGGCGAC
TCGGTGGCGC TGGACGAGCT CGTCCAGTCG CTGGTCGACA TCGGCTATTC GCGGGTCGAC
CTGGTGGAGA AGCGCGGGGA CATCGCGGTG CGCGGCGGCA TTCTCGACGT GTTCCCGCCC
ACCGAAGAGC ACCCCCTGCG GTTGGAATTC TGGGGCGACA CTGTTGAGGA GATCCGCTAC
TTCCAGGTCG CTGACCAGCG TTCCATCTCC AAGCCCGGAG CAGCCGAAGC CGGCCTGTTC
GCCCCGCCCT GCCGGGAGCT GCTGCTCACC GACACGGTGC GGAAGCGCGC CCGGGCCCTG
GCCGCCGAGT ACCCGGCGCT TGCCGACATC CTGACGAAGC TGGCGGACGG GGTGGCGGTC
GAAGGCATGG AAGCGTTCGC ACCGGTGCTC GCGGACCGGA TGGAGCTGCT CCTCGACCTG
CTGCCGCCGG GCACCCACAT CGTGGGCTGC GACCCGGAGC GGATCCGCAC CCGGGCCCAG
GAGCTGGTCG CGACCAGCCA GGAGTTCCTC GAAGCCTCCT GGATCAACGC TGCTTCCGGC
GGGGAGGCGC CCATCGACCT CGGCGCGTCC GCCTACCAGT CGATCGCCGA GCTGCGCTCG
CGGGCCCGGG AGCTGGGACT GCCGTGGTGG ACCGTCACCC CCTTCGACCC GGGCAACCCT
GCCGCAGCTG AAGACGACCA CTCGGTGGTG GTCGGCGCCT CAGCTACCGA CGCCTACCGG
GGGGACACCG AGCGGGCGAT CGCCGACGTC AAGTCGTGGC TGCACGAAGG CTGGCGGGTC
GTGCTGCTCA CCCCCGGACA GGGGCCGGCG GAGCGGCTCG CGTCCATGCT GCGGGACGCC
GGGCTGGGCA CGCAGTTGCG GGACGCGCTG CCGGAGCCGC CGGAGCCCGC GGTGGCTACG
GTCACCACCG GGCTGCTCGA GCACGGTTTC GTGTGGCGGT CGGTCCGCAC CGTGCTGCTC
ACCGAGACCG ACCTGGTGGG GCAGCGGTCC TCCACCCGCG ACATGCGGCG GATGCCGAGC
CGCCGCCGCG GTGTCGACCC GCTCCAGCTC AAACCCGGCG ACTACGTGGT GCATGAACAG
CACGGGATCG GCCGCTACGT CGAAATGGTG AGCCGGACGA TCCAGGGCGC CACGCGCGAG
TACCTGGTCA TCGAATATGC GCCGTCCAAA CGCGGACAGC CGGGGGACCG CCTGTTCGTG
CCGACCGACC AGCTCGACGA GGTGACCCGC TATGTCGGCG GGGACTCCCC CACCCTGTCG
AAGATGGGCG GCTCCGACTG GGCGAAGGCG AAGAGCCGGG CACGCAAGGC CGTCCGGGAG
ATCGCCGGGG ACCTGATCCG CTTGTACTCG GCCCGCCACG CCTCCCCCGG GCACGCGTTC
TCCCCGGACA CCCCGTGGCA GCGGGAGTTG GAGGACGCCT TCCCCTACGT GGAGACCCCC
GACCAGCTCG CCGCGATTGA AGAGGTCAAG CGCGACATGG AGAAGCCGGT GCCGATGGAC
CGGCTCATCT GCGGCGACGT CGGCTACGGC AAAACCGAGG TCGCCGTGCG CGCGGCTTTC
AAAGCGGTGC AGGACGGCAA GCAGGTGGCG GTGCTGGTGC CCACGACCCT GCTGGTCCAG
CAGCACCTGT CCACGTTCAC GGAGCGCTAC GCCTCGTTCC CGGTGACGGT CCGCCCGCTG
TCGCGGTTCC AGAGCGACGC CGAGATCGAA CGCATCCGCG AAGGCATGCG CACCGGGGAA
GTCGACGTGG TCATCGGCAC CCACCGGCTG CTCTCCCCGG AGACCCAGTT CAAAGACTTG
GGCCTGGTGA TCATCGACGA GGAGCAGCGC TTCGGCGTGG AGCACAAGGA GGCGTTGAAG
CGGCTGCGCA CCCAGGTGGA CGTCCTCTCG ATGTCGGCCA CTCCCATCCC CCGCACCTTG
GAGATGGGGT TGACCGGGAT CCGGGAGATG ACCACGATCC TCACTCCGCC GGAGGAGCGG
CACCCGGTCC TCACGTTTGT GGGCCCCTAC GACGAAAAGC AGATTGCCGC GGCCATCCGC
CGGGAGCTGA TGCGCGAAGG CCAGGTGTTC TTCGTGCACA ACCGGGTGGC GTCGATAGAA
CGGGCCGCCG CCACGGTGAG CCGCCTGGTG CCTGAGGCGC GGGTGGCCTG GGCCCACGGG
CAGATGAACG AGCACCAGCT CGAACGGGTC ATGGTCGACT TCTGGGAGAA GAAGTTCGAC
GTCCTGGTCT GCACCACGAT CGTGGAATCC GGGCTGGACG TGCCCAACGC CAACACGTTG
ATCGTGGACC GCGCCGACAC CTACGGGCTG GCCCAGTTGC ACCAGTTGCG CGGCCGGGTG
GGCCGCGGCC GGGAGCGCGC CTACGCCTAC TTCCTGTACC CGCCGGACAA GCCGCTCACG
GAGACCGCGC ACGAGCGGCT GGCCACGGTC GCCCAGCACA CGGAGAGCGG TGCGGGCATG
TACGTGGCGA TGAAGGACTT GGAGATCCGC GGCGCCGGCA ACATCCTGGG CACCGAGCAG
TCCGGGAGCA TTGCGGGGGT CGGTTTCGAC CTGTACGTGC GCATGGTCGG CGAGGCGGTG
CGGGAGCTCA AGGGCGACCA GAGCGCGGCC CAAGAGGTCG AGACCAAGGT CGAGCTGCCG
ATCAACGCGC ACATCCCGCA CGACTATGTG CCGGGTGAGC GGCTGCGGCT GGAGGCTTAC
CGGAGGATCG CCGAGGTCGC GAGCGAGGAC GACATCGCGG CAATCCGCGA GGAGCTGCTC
GACCGCTACG GCGAACCCCC GCAGCCGGTG GACAACCTGC TGGCGGTGGC GCGGTTCCGG
GTGCTGGCCC GCAGTGCTGG GCTGACCGAC GTGGTGCTGC AGGGCACGCA GATCCGGTTC
GCCCCGGTGG AGCTGCGCGA ATCCCAGCAG TTGCGGCTGC GTCGGCTCTA CCCCAAGGCG
GTGGTGAAGG CCGCGACGCG GACTCTGATG GTCCCGGTGC CCAAGTCTGG TGGGCTCGGC
GGCAAGCAGT TGCGTGACCG CGAACTGTTG ACGTGGTGCA CCGAACTGGT GGAGGCGATC
TTCGAACCGC AGCGGAAGCC GCCGCAGGAG TGA
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| Protein sequence | MPHVLRPLRA GRPSSHAPPG DMSLNGLLSV VTGDPALKRA IETARNGHDP LLDLVAPPSV
RPLIVAGLAA DAPVGAGRPV LALTATEREA ADLNSALGSL LPADSVALFP AWETLPHERL
SPRSDTVGQR LAVLRRLTHP DPDDPLTAPL RVVVAPIRSV LQPLVSGLGD LQPVRVREGD
SVALDELVQS LVDIGYSRVD LVEKRGDIAV RGGILDVFPP TEEHPLRLEF WGDTVEEIRY
FQVADQRSIS KPGAAEAGLF APPCRELLLT DTVRKRARAL AAEYPALADI LTKLADGVAV
EGMEAFAPVL ADRMELLLDL LPPGTHIVGC DPERIRTRAQ ELVATSQEFL EASWINAASG
GEAPIDLGAS AYQSIAELRS RARELGLPWW TVTPFDPGNP AAAEDDHSVV VGASATDAYR
GDTERAIADV KSWLHEGWRV VLLTPGQGPA ERLASMLRDA GLGTQLRDAL PEPPEPAVAT
VTTGLLEHGF VWRSVRTVLL TETDLVGQRS STRDMRRMPS RRRGVDPLQL KPGDYVVHEQ
HGIGRYVEMV SRTIQGATRE YLVIEYAPSK RGQPGDRLFV PTDQLDEVTR YVGGDSPTLS
KMGGSDWAKA KSRARKAVRE IAGDLIRLYS ARHASPGHAF SPDTPWQREL EDAFPYVETP
DQLAAIEEVK RDMEKPVPMD RLICGDVGYG KTEVAVRAAF KAVQDGKQVA VLVPTTLLVQ
QHLSTFTERY ASFPVTVRPL SRFQSDAEIE RIREGMRTGE VDVVIGTHRL LSPETQFKDL
GLVIIDEEQR FGVEHKEALK RLRTQVDVLS MSATPIPRTL EMGLTGIREM TTILTPPEER
HPVLTFVGPY DEKQIAAAIR RELMREGQVF FVHNRVASIE RAAATVSRLV PEARVAWAHG
QMNEHQLERV MVDFWEKKFD VLVCTTIVES GLDVPNANTL IVDRADTYGL AQLHQLRGRV
GRGRERAYAY FLYPPDKPLT ETAHERLATV AQHTESGAGM YVAMKDLEIR GAGNILGTEQ
SGSIAGVGFD LYVRMVGEAV RELKGDQSAA QEVETKVELP INAHIPHDYV PGERLRLEAY
RRIAEVASED DIAAIREELL DRYGEPPQPV DNLLAVARFR VLARSAGLTD VVLQGTQIRF
APVELRESQQ LRLRRLYPKA VVKAATRTLM VPVPKSGGLG GKQLRDRELL TWCTELVEAI
FEPQRKPPQE
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