| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0305 |
|---|
| Symbol | |
|---|
| ID | 3579978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 342303 |
|---|
| End bp | 342941 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637683989 |
|---|
| Product | amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_288366 |
|---|
| Protein GI | 72160709 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
[TIGR03003] ectoine/hydroxyectoine ABC transporter, permease protein EhuD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.210459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGGG ACTGGGAGTT CACCGGGCGG ATCATCCCCG ACCTGCTCAA CGGCCTCGCT
GTCACCGTGC AAGCCACGGT GCTGGGCTAC ACCCTGGCGC TCGTCCTCGG CCTCGCGGTG
GCCCTGGTAC GCCGCATCCC CGTGATCGGG ACCGCGGTGT TCGCGGTCAT GGAGTTCATC
CGCTGCACCC CGCTGCTCGT GCAACTGGTC TTCGTGTTCT CCCTGGCCCC GAACACGCTG
TCGGCGTTCA CCATCGGCGT GGCAGTGCTG GGCGTGCACT ATGCCGCCTA CACCGCGGAG
GTGTACCGGT CGGGCATCGA AGCCGTGCCC GCAGGCCAGT GGGAAGCCTG CCGGGCGTTG
AGCCTGCCCC TGCACCGCAC GTGGGGCGCG GTCATCCTCC CGCAGGCGAT CCGCCGCGTC
ATCCCTCCGC TCGGCAACTA CCTGATCGCC ATGTTCAAAG ACACGCCGCT GCTGTTCGCG
ATCACCGTCG GCGAACTGAT GTACCAGGCG TCGCAGATCG GCGGCGTGTA CTTCCGCTAC
CTGGAGGCCA TGACCCTCGT GGGTCTGTTC TTCCTCCTGG TGAGCGTGCC TTCAGCCATC
CTCATCCGAC AACTGGAGCG ACGCTATGCC GCAGTCTGA
|
|---|
| Protein sequence | MTWDWEFTGR IIPDLLNGLA VTVQATVLGY TLALVLGLAV ALVRRIPVIG TAVFAVMEFI
RCTPLLVQLV FVFSLAPNTL SAFTIGVAVL GVHYAAYTAE VYRSGIEAVP AGQWEACRAL
SLPLHRTWGA VILPQAIRRV IPPLGNYLIA MFKDTPLLFA ITVGELMYQA SQIGGVYFRY
LEAMTLVGLF FLLVSVPSAI LIRQLERRYA AV
|
|---|
| |