| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0286 |
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| Symbol | |
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| ID | 3578883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 319162 |
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| End bp | 323382 |
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| Gene Length | 4221 bp |
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| Protein Length | 1406 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637683970 |
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| Product | GAF sensor hybrid histidine kinase |
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| Protein accession | YP_288347 |
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| Protein GI | 72160690 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAGGT TGATGCCCAG GATGAAGAAC CGGACCCTGA CCGAAAGCGA ATTGGATGCC
TTGCTTGACG CGCTCTACCG GATGCGCGAC GGGGATTTCA CCGTGCGGCT CTCCCCCCGT
GGTGCGACCA GGTTCAGCGA AGTCGCCCGC GTGCTCAACG AGGTCTTCGA CCAGTGCGAG
CAGTTGAGCA ACGAAGTGCA GTGGGTCAGT GAAACGGTCA GCACGGACGG GCGGCTGTCC
GAACGTGTCT CGATCAGTCC GGCCCGTGGC TCCTGGGGCC AGAGCGTGCG GGCGCTCAAC
CAGATGCTCG ACGAGGTCAG TGAGCCGGTG ACCGCGGTGG CGCGGATTCT GGACTCGGTG
GCCAACGGCG ACCTTTCACA GCGGGTGGAT CTGGCCAGCC GGCACGGGGA GCTCCACGGC
GACCTGCTGC GGCTCGCCAC GTCGGTGAAC CGGATGGCGG ACCAGATGTC GGAGTTCGCG
GGCGAGGTCA CCCGGGTGGC GCGCGAAGTC GGCACCGAAG GCAAGCTCGG CGGCCGCGCC
AACGTCAAAG GCGTCTCCGG CATCTGGAAA GACCTCACCG ACAACGTCAA CTCCATGGCC
GACAACCTCA CCAACCAGGT GAGGGACATC TCCCAGGTGA CGACGGCGGT GGCCCGCGGC
GACCTCACCA AAAAGGTCAC CGTGGACGTC CAAGGCGAAA TGCTCCAGCT CAAAGACACC
GTCAACACCA TGGTCGACCA GCTGTCGACC TTCGCCGACG AGGTCACCCG GGTGGCGCGC
GAAGTCGGCA CCGAAGGCAA ACTCGGCGGC CGCGCCAACG TCAAAGGCGT CTCCGGCATC
TGGAAAGACC TCACCGACAA CGTCAACTCC ATGGCCGACA ACCTCACCAA CCAGGTGAGG
GACATCTCCC AGGTGACGAC GGCGGTGGCC CGCGGCGACC TCACCAAAAA GGTCACCGTG
GACGTCCAAG GCGAAATGCT CCAGCTCAAA GACACCGTCA ACACCATGGT CGACCAGCTG
TCGACCTTCG CCGACGAGGT CACCCGGGTG GCGCGCGAAG TCGGCACCGA AGGCAAACTC
GGCGGCCGCG CCAACGTCAA AGGCGTCTCC GGCATCTGGA AAGACCTCAC CGACAACGTC
AACTCCATGG CGGACAGCCT GACCCACCAG GTGCGCAACA TCTCCCAGGT GACGTCGGCG
GTGGCGGCAG GAGATCTGAC GAAGAAGATC ACCGTGGACG CCCAGGGCGA GATCCTGGAG
TTGAAGGACA CCGTCAACAC GATGGTCGAC CAGTTGTCCG CGTTCGCCGA CGAAGTCACC
CGGGTGGCGC GCGAAGTCGG CACCGAAGGC AAACTCGGCG GCCAGGCGCA TGTGAGCGGC
GTGTCGGGGG TGTGGAAGGA CCTCACCGAC AACGTCAACT CCATGGCCAA CAACCTGACC
CACCAGGTGC GGCAAATCTC CGTGGTGACG ACAGCGGTGG CCCGCGGCGA CCTCACCAAA
AAGGTCACGG TCAACGCCAA GGGCGAGATC CTGGAGTTGA AGGACACCAT CAACACGATG
GTCGACCAGC TGTCGACCTT CGCCGACGAA GTCACCCGGG TGACGCGCGA AGTCGGCACC
GAAGGCAAGC TCGGCGGCCG CGCCAACGTC AAAGGCGTCT CCGGCATCTG GAAAGACCTC
ACCGACAACG TCAACTCCAT GTCGCACAAC CTGACCACTC AGGTGCGCAA CATCTCCCAG
GTGACGACGG CGGTGGCCCG CGGCGACCTC ACCAAGCGGA TCACCGTGGA CGCCCAAGGC
GAGATGCTGG AGTTGAAGGA CACCATCAAC ACGATGGTCG ACCAGCTGTC CACGTTCGCG
TTGGAGGTCA CGCGGGTCGG CCACGAAGTG GGTATTGAAG GCAAGCTCGG CGTCCAAGCG
AAAGTGGCCG GCGTGTCGGG GGTGTGGAAG GACCTCACCG ACTCCGTCAA CGAGCTGGCG
AAGAACCTCA CCACGCAGGT GCGGGCGATC GCGTCGGTGG CGAGCGCGGT GGCCCGCGGC
GACCTGACCC AGTCGATCCA GGTGAGCGCC CGCGGGGAGC TGGCCACGTT GAAGGACAAC
GTCAACCTGA TGGTGTCCAA CCTGCGGGAG ACGACCGCGG CCCAGCGGGA CGAGGACTGG
TTGAAGAGCA ACCTGGCGCG GCTGTCCGGC CTCCTCCAGG GGCGCCGCGA CCTCAACGAG
CTGGCACGCC TCATCATGAC CGAGGTGACC CCGCTCGTGG ACGCCCAGCA CGGCGCCTGC
TACCTGCCGG AGGACGAGAA CGACACCGAG ACCTTCCGGC TCTACGCCGG CTACGGCTAC
CAGCCGAGTG AGGAGCGCCG CCGGATCACC GCGGGCCAGG GACTGGCCGG GGAGGCTATT
GCGCAGCGCA AGGAGCTGAT CGTCCACAAC GTCCCCGGCG ACTATGTGCG GATCGAATCA
GGACTGGGCG AGGCGCCTCC GTTGAGCCTC GCCATCTTCC CGATCGTGTC GGAAGACCGG
GTGCTCGGCG TGATCGAACT GGGCTCCTAC GGCACGTTCC GGGAGATCCA TCTCAACTTC
CTGCGACAGC TGGTCAGCCT GCTCAGCGCC ACGATCACCA CTATCCTGGC CAACTCCAAG
ACCGAGTACC TGCTGGCCCA GTCGCAGCAG TTGACGACCG CGCTGCAGGA GCGCTCCAAC
GAGCTGCAGC GCCAGCAGGA GGAGCTGCGC CGCAAGAACG CGGAACTGCA CAGCAAGGCG
GGGCAGTTGG CCAGCCAGAA CCGCGCGATC GAACTGCAGA ACCGGCAGAT CGAGCGAGCC
CGGCGGTCCT TGGAGGACCG GGCGCACCAG TTGCAGGTGT CCTCCAAGTA CAAGTCGGAG
TTCTTGGCGA ACATGTCGCA TGAGCTCCGT ACCCCGCTCA ACAGCCTGCT GATCCTCGCG
CGGCTCCTGG CCGACAATAG CGAGAAGAAC TTGACCCCCA AGCAGGTGGA GTTCGCGCAG
ACCATCTACA AGGCCGGCAG TGACCTGCTG CAGCTCATCA ATGAGATCCT CGACCTGTCC
AAGGTTGAGG CCGGGCGGAT GGAGCTGAAC CCGAGCCACG TGTCCATCAG CCAGCTGGTG
GACTACGTGG AGGCGTCGTT CCGTCCACTG GCCAGCGAAA AGGGACTGGC GTTCGCGGTG
GAGGTGTCCC CGGACGTCCC CGACCAGTTG TGGACGGACG AGCAGCGGCT CCAGCAGGTG
CTGCGCAACC TGCTGTCCAA CGCCGTGAAG TTCACCAGCA GCGGCGAGGT ACGGCTGGTG
ATCGAACCGG CGTGGGCCGT GGAGGACATC GACGTGGACA CGTTCACCGA CCCCGACGAA
GTGATCGCGT TCTCCGTGAT CGACACCGGG ATCGGTATCC CCGAGGACAA GCTCCAGTTG
ATTTTCGAAG CGTTCCACCA GGGCGACGGC GGCACGAGCC GCCGGTTCGG CGGCACCGGC
CTGGGGCTGT CGATCAGCCG CAACATGGCG GAACTGCTCG GCGGGGAGAT CCGCGTGTCG
AGCACCGTGG GGGAAGGCAG CACGTTCACC CTCCTGCTGC CGGTGCGGCT GCCTGAGGGC
ACGTCTGAGC GGATGTACCG GTCGCTCAGC GACGCGGACG TGGTGACCTC GTTCGACAGG
CCCACGGACA CGGTCGTCCT GCCCACGGAA ACGCCCGGGC CCAAGGCCGC GGACACCGAT
CCGCTCGCCT CGTCCGAGGA CGAGCCCTAC GTGCCGGTGC TGACCGCAGA GTCCGTGCCG
CAGGCCGCGG GCGGCCCCCA GCAGGACGAC GTGTTGGCGG GCAAGCGGGT GCTCATCGTC
GACGACGACA TCCGGAACGT GTTCGCGCTC GCGAGCGCGC TGGAAGCGCA CGGCCTCGAA
GTGCTCTACG CGGACAACGG CCGGGAGGGG ATCGCGAAGC TGGAAGCCAA CGAGGACATC
GACCTGGTGT TGATGGACAT CATGATGCCC GAGTTGGACG GTGACGCCAC TACCCGCATG
ATCCGGGAGA TGCCGCAGTT CGCGGACTTG CCGATCATTT CGCTGACGGC CAAGGCGATG
CGGGGCGACC GGGAGAACAG TCTGGCCGCG GGAGCCTCGG ACTATGTGAG CAAGCCCGTG
GATCTCGACC ACCTGCTGAA TGTCATGCGG CGGTGGTTGG ATCGCGGTAA GAGTGACAAC
AGCACAAGCC GGGAGCAGTG A
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| Protein sequence | MPRLMPRMKN RTLTESELDA LLDALYRMRD GDFTVRLSPR GATRFSEVAR VLNEVFDQCE
QLSNEVQWVS ETVSTDGRLS ERVSISPARG SWGQSVRALN QMLDEVSEPV TAVARILDSV
ANGDLSQRVD LASRHGELHG DLLRLATSVN RMADQMSEFA GEVTRVAREV GTEGKLGGRA
NVKGVSGIWK DLTDNVNSMA DNLTNQVRDI SQVTTAVARG DLTKKVTVDV QGEMLQLKDT
VNTMVDQLST FADEVTRVAR EVGTEGKLGG RANVKGVSGI WKDLTDNVNS MADNLTNQVR
DISQVTTAVA RGDLTKKVTV DVQGEMLQLK DTVNTMVDQL STFADEVTRV AREVGTEGKL
GGRANVKGVS GIWKDLTDNV NSMADSLTHQ VRNISQVTSA VAAGDLTKKI TVDAQGEILE
LKDTVNTMVD QLSAFADEVT RVAREVGTEG KLGGQAHVSG VSGVWKDLTD NVNSMANNLT
HQVRQISVVT TAVARGDLTK KVTVNAKGEI LELKDTINTM VDQLSTFADE VTRVTREVGT
EGKLGGRANV KGVSGIWKDL TDNVNSMSHN LTTQVRNISQ VTTAVARGDL TKRITVDAQG
EMLELKDTIN TMVDQLSTFA LEVTRVGHEV GIEGKLGVQA KVAGVSGVWK DLTDSVNELA
KNLTTQVRAI ASVASAVARG DLTQSIQVSA RGELATLKDN VNLMVSNLRE TTAAQRDEDW
LKSNLARLSG LLQGRRDLNE LARLIMTEVT PLVDAQHGAC YLPEDENDTE TFRLYAGYGY
QPSEERRRIT AGQGLAGEAI AQRKELIVHN VPGDYVRIES GLGEAPPLSL AIFPIVSEDR
VLGVIELGSY GTFREIHLNF LRQLVSLLSA TITTILANSK TEYLLAQSQQ LTTALQERSN
ELQRQQEELR RKNAELHSKA GQLASQNRAI ELQNRQIERA RRSLEDRAHQ LQVSSKYKSE
FLANMSHELR TPLNSLLILA RLLADNSEKN LTPKQVEFAQ TIYKAGSDLL QLINEILDLS
KVEAGRMELN PSHVSISQLV DYVEASFRPL ASEKGLAFAV EVSPDVPDQL WTDEQRLQQV
LRNLLSNAVK FTSSGEVRLV IEPAWAVEDI DVDTFTDPDE VIAFSVIDTG IGIPEDKLQL
IFEAFHQGDG GTSRRFGGTG LGLSISRNMA ELLGGEIRVS STVGEGSTFT LLLPVRLPEG
TSERMYRSLS DADVVTSFDR PTDTVVLPTE TPGPKAADTD PLASSEDEPY VPVLTAESVP
QAAGGPQQDD VLAGKRVLIV DDDIRNVFAL ASALEAHGLE VLYADNGREG IAKLEANEDI
DLVLMDIMMP ELDGDATTRM IREMPQFADL PIISLTAKAM RGDRENSLAA GASDYVSKPV
DLDHLLNVMR RWLDRGKSDN STSREQ
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