Gene Tfu_0250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0250 
Symbol 
ID3579848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp279658 
End bp281919 
Gene Length2262 bp 
Protein Length753 aa 
Translation table11 
GC content68% 
IMG OID637683934 
ProductPAS containing protein phosphatase 2C-like 
Protein accessionYP_288311 
Protein GI72160654 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.337993 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGGT GGGGGGAAGC CTTCTACGAC GATGCACTGT CAGGAGCCGA AGTCCTGGAA 
CAGGTGCAGA TCGCCGTGGT GGTGACGGAC CGCTTCAGCA ACCTCCGCTA CTGGAACTCT
TACGCCACCC AGCTTTTCGG GCTCGATGAC GGGCGCGACT ACCTCGGCAC CCCCCTCGTA
GACATCGGTA TCCACGAAGC CGACCACGAG CAGCTCGCCC AGCTCGCCCG CAGGGTCCTG
CGTGGGGACA CCTGGGAAGG CACTTTCGCG GTGCTGCGCA AGGACTCCAC CTGGATGCAC
CTGCGGGCCA GCGCGGTTCC CCTCCGGCCG TCCTCCGGTG CCGTGGAGGG CGTGGTCCTC
TTCATCACCG AGGCGCTGCG AAGCGGCCGG ATTGAGGAAC AGTACGGGCT GCTGGACCGG
ATCGGACGGC GACTGGCCAG TTCGCTCGAG TTCGAAGCCA CCGTGAAGGC TGTCGCGGAG
ATCCTGGTCC CCCAGTTCGC CGACCACTGC TTCATCGACC TCAACGACCA CGGCAGGCTG
ATCCGCCGTG TCTCCGTGCA CGCCGAGGGG TGGACTCCGC CGCCGGGCAG CTGGCCTGAC
GTCGGCGAGG AGGTGCACTA CCCCGAGAAG CACTTCGTCT CCAAGGCACT GCGCCGGATG
GAGACGGTCG TGGTCAGCGA CTACTCCAAC CCGGGCTCCA CGGCCGGAGT GTTCCCCAAC
CGGCGTTCCG TGCGCGTCTC CGAACAGGTC GGAGTGACGT CGGTGATCGC GGCGCCGCTG
CGCGCCCGCG GTGTCACCTT AGGCGTGCTC ACCCTGGCCC GGTCCGGGCT CACGTCCCGC
GACAAGACCG ACTACGACAG TTTCGACCGC GACCTGGTCG GCACGATCGC GTCCCGGGTC
GCCGTAGCAA TCGACAACGC CCGCCTTTTC GAAGAGGAAC GCGACACCGC ACTCGCCTTC
CAGAACAGCC TGCTGCCCCG GGAATTCCCC GAATTCGACG GACTGTCCAT CGCCCACGAC
TACATTCCCG CCAAACCGCT GGAGGCGCAC GGCCAAGGAA TCCAGACCCA GGTCGGCGGG
GACTTCTATG ACGTGATTCC GCTGTCGGCG GGGCGGGTCG GCATCGTCAT CGGCGACGTC
GAAGGCAAAG GCCCCCACGC AGCAGCGGTC ATGGGCCAAC TGCGGGCCGC GCTGCGGGCG
TTCGCCCAAG CTGACCGGGA ACCCGCCGAG ATCCTGCGCG AACTCGACGA GTGGGTCCGC
CAGTTGGGCC GCCCGGACGG GGAAGGCAAC ACCTGGGTAC CGAGCGTCAG TTGCTTGTAC
ATGGCGTACG ACGCCTGGTC TCGGGAGCTG ACGTACGCCA ACGCGGGCCA CCAGCCTCCA
CTGCTGATCT GCGGCGGCAA GGTCGACGAC CTGGACATGG CGATCCGCGA CAAACTGCTG
GGCGTCAAAC CCAAGGGGGT GCCCGGCGAC TCGGTGTACC GGCAGGGGGA GCTCACGCTG
CCGCCGGGGG CGACGCTGCT GCTGTACACG GACGGCCTGG TCGCACGCCG GTCGTACGAC
GGCACCGTCG ACATGGAGGC CGGACTGGAG CAGCTTCGGT CACGGGTCCG GGAGGTCGCC
GACAAGGACG TCCACCAGAT CCTGGAGGTG GCTAAGCGCG CGGTCCCCGG AGTGGCTGAC
GACGACACCG CGCTGCTCGT GGTTCGCTCC CACCCGGAGG AGCTGGCGCT CAAGCAGGAG
TGGTTCCCCG CCGAGGCGCC TACGGTGGCG GAGGCCCGGC ACTTGGCCGT GGACACGTTC
AAGGAGTGGG GGATGGACCG GGACCAGGCA GAGCTGGCCT GCCTGCTGGT CTCGGAGATC
GTCACCAACG TGGTCATCCA CGCCACTCCC CACCCGGTGA CCCGCGAGTT CACCGACGAC
GGGGTCAAGG ACTCCGACGA GCAGCTGCCG CTGGACGGTT TCGACGAGTT CGACGAGGAC
TGGTCGGATC TGCTGGAGGA AGCGGCCGAG CAGGATGAGG AGCCGGTGCC CACCAGCCGC
GAGTTCCTGC TGCGGCTCCG CCGCGGCGCC TCCTCGGTGT GGGTGGAGGT CTTCGACCAC
GACCTGCGGC TGCCGCGGAT CCGTACTGCC GGTGCGGAAG ACGAAGGCGG CCGTGGCCTC
TACCTCGTGG ACCAGCTGGC CGAGCGGTGG GGGTCCAGGC CCACCCCCGA CGGCAAGGCC
GTGTGGTTCC AGATCCCCAT GCACCAGCCG GACAGCGAGT GA
 
Protein sequence
MKRWGEAFYD DALSGAEVLE QVQIAVVVTD RFSNLRYWNS YATQLFGLDD GRDYLGTPLV 
DIGIHEADHE QLAQLARRVL RGDTWEGTFA VLRKDSTWMH LRASAVPLRP SSGAVEGVVL
FITEALRSGR IEEQYGLLDR IGRRLASSLE FEATVKAVAE ILVPQFADHC FIDLNDHGRL
IRRVSVHAEG WTPPPGSWPD VGEEVHYPEK HFVSKALRRM ETVVVSDYSN PGSTAGVFPN
RRSVRVSEQV GVTSVIAAPL RARGVTLGVL TLARSGLTSR DKTDYDSFDR DLVGTIASRV
AVAIDNARLF EEERDTALAF QNSLLPREFP EFDGLSIAHD YIPAKPLEAH GQGIQTQVGG
DFYDVIPLSA GRVGIVIGDV EGKGPHAAAV MGQLRAALRA FAQADREPAE ILRELDEWVR
QLGRPDGEGN TWVPSVSCLY MAYDAWSREL TYANAGHQPP LLICGGKVDD LDMAIRDKLL
GVKPKGVPGD SVYRQGELTL PPGATLLLYT DGLVARRSYD GTVDMEAGLE QLRSRVREVA
DKDVHQILEV AKRAVPGVAD DDTALLVVRS HPEELALKQE WFPAEAPTVA EARHLAVDTF
KEWGMDRDQA ELACLLVSEI VTNVVIHATP HPVTREFTDD GVKDSDEQLP LDGFDEFDED
WSDLLEEAAE QDEEPVPTSR EFLLRLRRGA SSVWVEVFDH DLRLPRIRTA GAEDEGGRGL
YLVDQLAERW GSRPTPDGKA VWFQIPMHQP DSE