Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0250 |
Symbol | |
ID | 3579848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 279658 |
End bp | 281919 |
Gene Length | 2262 bp |
Protein Length | 753 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637683934 |
Product | PAS containing protein phosphatase 2C-like |
Protein accession | YP_288311 |
Protein GI | 72160654 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.337993 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGCGGT GGGGGGAAGC CTTCTACGAC GATGCACTGT CAGGAGCCGA AGTCCTGGAA CAGGTGCAGA TCGCCGTGGT GGTGACGGAC CGCTTCAGCA ACCTCCGCTA CTGGAACTCT TACGCCACCC AGCTTTTCGG GCTCGATGAC GGGCGCGACT ACCTCGGCAC CCCCCTCGTA GACATCGGTA TCCACGAAGC CGACCACGAG CAGCTCGCCC AGCTCGCCCG CAGGGTCCTG CGTGGGGACA CCTGGGAAGG CACTTTCGCG GTGCTGCGCA AGGACTCCAC CTGGATGCAC CTGCGGGCCA GCGCGGTTCC CCTCCGGCCG TCCTCCGGTG CCGTGGAGGG CGTGGTCCTC TTCATCACCG AGGCGCTGCG AAGCGGCCGG ATTGAGGAAC AGTACGGGCT GCTGGACCGG ATCGGACGGC GACTGGCCAG TTCGCTCGAG TTCGAAGCCA CCGTGAAGGC TGTCGCGGAG ATCCTGGTCC CCCAGTTCGC CGACCACTGC TTCATCGACC TCAACGACCA CGGCAGGCTG ATCCGCCGTG TCTCCGTGCA CGCCGAGGGG TGGACTCCGC CGCCGGGCAG CTGGCCTGAC GTCGGCGAGG AGGTGCACTA CCCCGAGAAG CACTTCGTCT CCAAGGCACT GCGCCGGATG GAGACGGTCG TGGTCAGCGA CTACTCCAAC CCGGGCTCCA CGGCCGGAGT GTTCCCCAAC CGGCGTTCCG TGCGCGTCTC CGAACAGGTC GGAGTGACGT CGGTGATCGC GGCGCCGCTG CGCGCCCGCG GTGTCACCTT AGGCGTGCTC ACCCTGGCCC GGTCCGGGCT CACGTCCCGC GACAAGACCG ACTACGACAG TTTCGACCGC GACCTGGTCG GCACGATCGC GTCCCGGGTC GCCGTAGCAA TCGACAACGC CCGCCTTTTC GAAGAGGAAC GCGACACCGC ACTCGCCTTC CAGAACAGCC TGCTGCCCCG GGAATTCCCC GAATTCGACG GACTGTCCAT CGCCCACGAC TACATTCCCG CCAAACCGCT GGAGGCGCAC GGCCAAGGAA TCCAGACCCA GGTCGGCGGG GACTTCTATG ACGTGATTCC GCTGTCGGCG GGGCGGGTCG GCATCGTCAT CGGCGACGTC GAAGGCAAAG GCCCCCACGC AGCAGCGGTC ATGGGCCAAC TGCGGGCCGC GCTGCGGGCG TTCGCCCAAG CTGACCGGGA ACCCGCCGAG ATCCTGCGCG AACTCGACGA GTGGGTCCGC CAGTTGGGCC GCCCGGACGG GGAAGGCAAC ACCTGGGTAC CGAGCGTCAG TTGCTTGTAC ATGGCGTACG ACGCCTGGTC TCGGGAGCTG ACGTACGCCA ACGCGGGCCA CCAGCCTCCA CTGCTGATCT GCGGCGGCAA GGTCGACGAC CTGGACATGG CGATCCGCGA CAAACTGCTG GGCGTCAAAC CCAAGGGGGT GCCCGGCGAC TCGGTGTACC GGCAGGGGGA GCTCACGCTG CCGCCGGGGG CGACGCTGCT GCTGTACACG GACGGCCTGG TCGCACGCCG GTCGTACGAC GGCACCGTCG ACATGGAGGC CGGACTGGAG CAGCTTCGGT CACGGGTCCG GGAGGTCGCC GACAAGGACG TCCACCAGAT CCTGGAGGTG GCTAAGCGCG CGGTCCCCGG AGTGGCTGAC GACGACACCG CGCTGCTCGT GGTTCGCTCC CACCCGGAGG AGCTGGCGCT CAAGCAGGAG TGGTTCCCCG CCGAGGCGCC TACGGTGGCG GAGGCCCGGC ACTTGGCCGT GGACACGTTC AAGGAGTGGG GGATGGACCG GGACCAGGCA GAGCTGGCCT GCCTGCTGGT CTCGGAGATC GTCACCAACG TGGTCATCCA CGCCACTCCC CACCCGGTGA CCCGCGAGTT CACCGACGAC GGGGTCAAGG ACTCCGACGA GCAGCTGCCG CTGGACGGTT TCGACGAGTT CGACGAGGAC TGGTCGGATC TGCTGGAGGA AGCGGCCGAG CAGGATGAGG AGCCGGTGCC CACCAGCCGC GAGTTCCTGC TGCGGCTCCG CCGCGGCGCC TCCTCGGTGT GGGTGGAGGT CTTCGACCAC GACCTGCGGC TGCCGCGGAT CCGTACTGCC GGTGCGGAAG ACGAAGGCGG CCGTGGCCTC TACCTCGTGG ACCAGCTGGC CGAGCGGTGG GGGTCCAGGC CCACCCCCGA CGGCAAGGCC GTGTGGTTCC AGATCCCCAT GCACCAGCCG GACAGCGAGT GA
|
Protein sequence | MKRWGEAFYD DALSGAEVLE QVQIAVVVTD RFSNLRYWNS YATQLFGLDD GRDYLGTPLV DIGIHEADHE QLAQLARRVL RGDTWEGTFA VLRKDSTWMH LRASAVPLRP SSGAVEGVVL FITEALRSGR IEEQYGLLDR IGRRLASSLE FEATVKAVAE ILVPQFADHC FIDLNDHGRL IRRVSVHAEG WTPPPGSWPD VGEEVHYPEK HFVSKALRRM ETVVVSDYSN PGSTAGVFPN RRSVRVSEQV GVTSVIAAPL RARGVTLGVL TLARSGLTSR DKTDYDSFDR DLVGTIASRV AVAIDNARLF EEERDTALAF QNSLLPREFP EFDGLSIAHD YIPAKPLEAH GQGIQTQVGG DFYDVIPLSA GRVGIVIGDV EGKGPHAAAV MGQLRAALRA FAQADREPAE ILRELDEWVR QLGRPDGEGN TWVPSVSCLY MAYDAWSREL TYANAGHQPP LLICGGKVDD LDMAIRDKLL GVKPKGVPGD SVYRQGELTL PPGATLLLYT DGLVARRSYD GTVDMEAGLE QLRSRVREVA DKDVHQILEV AKRAVPGVAD DDTALLVVRS HPEELALKQE WFPAEAPTVA EARHLAVDTF KEWGMDRDQA ELACLLVSEI VTNVVIHATP HPVTREFTDD GVKDSDEQLP LDGFDEFDED WSDLLEEAAE QDEEPVPTSR EFLLRLRRGA SSVWVEVFDH DLRLPRIRTA GAEDEGGRGL YLVDQLAERW GSRPTPDGKA VWFQIPMHQP DSE
|
| |