Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0184 |
Symbol | |
ID | 3579762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 207217 |
End bp | 209025 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637683867 |
Product | BCCT transporter |
Protein accession | YP_288245 |
Protein GI | 72160588 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCACCGTG CTTGTAGAGG GGGTGGCGCG ACTCCGCGCC AAGACGTCGT GGTACGACCA ACTCACGGAT CATCCGATAC GACCACCAAC TCGGCCGACA ACCAAGACCT GCTGTGGGAA CCGCCTCCCG TCCTCGAAGC GGAGCGGCCG CCGCGGACGG ACTGGGCAGT GTTCCTCACC GCAGCAGCGT TCACCCTGGC CTTCGTCGCG TGGGGGGCGA TCTCTGACGA GACGCTGGCC CAGGTCGCCG AGAACCTGCT GGCCGGGTTG ATGCGCTACG GCGGCTGGGC GTTTGTGCTG GTCGCCGGAG TGTTCGTGGT GTTCGCGCTG TGGCTGGCCT TCAGCAAGTA CGGGCAGATC CCCCTCGGCC GGGAGGGGGA GGAGCCCCAG TACACGACGG TGTCGTGGGT CGCCATGATG TTCGCCACCG GTATGGGGAT CGGGCTGGTG TTCTACGGGG TGGCAGAACC CTTGGCCCAC TACGTCACTC CCCCACCGGG CACGGATGCC GCGAGTGAAT CGCAGCGGAC TCTCACCGCG ATCGCCACCA CCTTGTTCCA CTGGACCCTG TATCCGTGGG GCATCTACGC GGTGGTCGGC TTAGCGATCG CATACACCAC CTTCCGCCGG GGGCACAGCC AGCTCATCAG CGCCGCGTTC ATCCCGCTGT TCGGGGAGAG GGCCGCAAAA GGGCCGCTCG GCAAGGCGGT CGACGTGATC GCGATCCTGG CCACCCTGTT CGGGTCTGCC TGCTCGCTGG GGCTGGGGGC GCTGCAGATC GCGGGAGGGT TCCAGACCCT GGGGTGGACG AGCCAGACGA CGTTCGGCCT GCTGTTTCTG ATCATCGCGG CCATCATGGC CTGCTACCTG GTCTCCGCGG TCTCCGGAAT CGCGCGGGGG ATCAAGTGGC TGTCCAACAC CAACATGGTG ATGGCCGTGC TGCTGCTCGT CTTCGTGCTG GTCACCGGGC CGACCGTGTA CATCCTGGAC CTCGTGCCGG GCGCGGTGGC CACGTTCTTC CAGGACTTTT TTGAGATGGC GGGACGCACT CAGGCGGTCG GCGGCAACAC CGCGGAGTGG CTGTCAACAT GGACCGTGTT CTACTGGGCC TGGTGGATCT CGTGGACCCC GTTCGTGGGG CTGTTCATCG CCAAGATCAG CCGCGGCCGC ACGATCAGGG AGTTCGTGGC CGGTGTCATC GTGGTGCCGA GCGTGGTCAG CCTGATCTGG TTCGTCATCT TCGGGTGCAC GGCGATCCAT TTCCAGCAGT CGGGGGTTGA TCTAGCCGCG TCCAACCAGA TCGAGGCGCA GTTCTACGGG ATGCTGCAGA ACCTGCCGTG GAGCGGCGTG GTGAACGTGG TGCTCGCCGT GCTGGTCGCG ATCTTCTTCA TCACCGGCGC GGACTCGGCA TCCATTGTCA TGGGCACGCT CACCCAAGGC GGAGTGGACA AGCCGCGGCT GGCCATGACC GTGCTGTGGG GGATGCTCAT CGCGGCGGTG GCCGCGATCA TGCTGCTCGT CGGCGAGGGC GGCAGCACCG CGATCGACGG GCTGCAGAAC ATCACCATCC TCGGGGCTGC TCCGTGGGCG ATCGTCATGC TCCTGCTGTG TGTGGCCTTG CTGAAAGGGC TGCGGCGGGA TCCTCTGGCG GTGCGGGAGC GCAAAGCCAG GGAGCTCATG GACGAGGCGG TCATCACCGG GGCCCGCACC TACGGGGAGA GCGGGTTCCA GTTCCCGGTG GCGCCGGCGC GGCGGGAGGA GGCGCCACCG CCGCCGCGGA AGGGTGACGG GGACGCCTCC GAAACGTAG
|
Protein sequence | MHRACRGGGA TPRQDVVVRP THGSSDTTTN SADNQDLLWE PPPVLEAERP PRTDWAVFLT AAAFTLAFVA WGAISDETLA QVAENLLAGL MRYGGWAFVL VAGVFVVFAL WLAFSKYGQI PLGREGEEPQ YTTVSWVAMM FATGMGIGLV FYGVAEPLAH YVTPPPGTDA ASESQRTLTA IATTLFHWTL YPWGIYAVVG LAIAYTTFRR GHSQLISAAF IPLFGERAAK GPLGKAVDVI AILATLFGSA CSLGLGALQI AGGFQTLGWT SQTTFGLLFL IIAAIMACYL VSAVSGIARG IKWLSNTNMV MAVLLLVFVL VTGPTVYILD LVPGAVATFF QDFFEMAGRT QAVGGNTAEW LSTWTVFYWA WWISWTPFVG LFIAKISRGR TIREFVAGVI VVPSVVSLIW FVIFGCTAIH FQQSGVDLAA SNQIEAQFYG MLQNLPWSGV VNVVLAVLVA IFFITGADSA SIVMGTLTQG GVDKPRLAMT VLWGMLIAAV AAIMLLVGEG GSTAIDGLQN ITILGAAPWA IVMLLLCVAL LKGLRRDPLA VRERKARELM DEAVITGART YGESGFQFPV APARREEAPP PPRKGDGDAS ET
|
| |