| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0153 |
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| Symbol | |
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| ID | 3581553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 177500 |
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| End bp | 178849 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637683836 |
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| Product | pectate lyase/Amb allergen |
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| Protein accession | YP_288214 |
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| Protein GI | 72160557 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGAG CTGCCACCCT CGGCGTGGCC CTCGCGCTGC CGCTCACCCT GGCGGCACCC
AGCAGCGCGT TGGCTCAGCC GCACCACCAC GCCGGGGTCT CCCCCAAAGC CGAACAAGTC
GCCCGCGAAG TGCTCGCCCC CAACGACGGC TGGGCCGCCT ACGACGGCGG TACCACCGGC
GGCGCTGCGG CCGACCCCGA ACACGTCTAC GTTGTCACGA CCTACGCCGA ACTGCGCGAG
GCACTGGCCG GAGGCCGCAC CAACGACACA CCCAAGATCG TCTTCCTCAA GGGGCGCATC
GACGCCAACA CCGACGAGCA CGGCAACCAG CTCACCTGCG ACGACTACGC CGACCCGGAA
TACGACTTCG ACGCCTACCT CGCTACCTAC GACCCCGAAG TCTGGGGCTG GGACCAGGAA
CCGTCCGGCC CCCTCGAAGA AGCGCGGGAA CGCTCCTACC GCAACCAGCG CGACCAGGTC
GTCATCGAAG TCGGCTCCAA CACGACCCTC ATCGGCCTGG GCGACGACGC CACACTCGTC
GGCGCCCAGG TCATGGTGGA CAGCGTCGAC AACGTGATCA TCCGCAACAT CATCTTCGAA
ACCGCCCAGG ACTGCTTCCC CCAGTGGGAT CCCACGGACG GCCCCGAAGG GAACTGGAAC
TCCGAATTCG ACGGAGTCTC GGTCCGCCGC TCCACCCACG TGTGGATCGA CCACAACGAG
TTCAGCGACG GCGCAGTACT CGACCGTGAC CTGCCCGAAT ACTTCGGCCG CGAATTCCAG
GTCCACGACG GGCTCCTGGA CATCACCCAC GGGGCCGACC TGGTCACCGT CTCCTACAAC
GTGCTGCGCG ACCACGACAA GACCATGCTC ATCGGCAGCA CCGACTCGCC AACCTACGAC
GTGGGCAAAC TGCGGGTCAC CCTGCACCAC AACCGCTGGG AGAACGTGCT GCAGCGCGCT
CCCCGGGTCC GCTACGGGCA GGTCCACGTG TACAACAACC ACTACGTGAT CCCTGCCACG
CCCGAGGGCG AGAAGACCTA CGAGTACTCG TGGGGGGTCG GCGTGGAATC CGCGCTGTAC
GCGGAGAACA ACTACTTCGA CATCGACCCG TCCGTCGACT TCTCCCAGGT CGTCGCCCAC
TGGAAGGGCA CCCAGATGTA CGAGAAGGGA AGCTACGCCA ACGGCCGCTC CCGGCACCAC
CAGGTGAGCT TCCTCGACGA ATACAACGCG GTCCACAGCC CGACCATCGA GAACAAGCAG
ACCTGGAGCC CTCCGCTCCA CGGCCGGATC GACCCCACCC AGTCGGTGCC CGCCAAGGTG
CAGAAAGCCG GGGTGGGCCA CATCCTCTGA
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| Protein sequence | MRRAATLGVA LALPLTLAAP SSALAQPHHH AGVSPKAEQV AREVLAPNDG WAAYDGGTTG
GAAADPEHVY VVTTYAELRE ALAGGRTNDT PKIVFLKGRI DANTDEHGNQ LTCDDYADPE
YDFDAYLATY DPEVWGWDQE PSGPLEEARE RSYRNQRDQV VIEVGSNTTL IGLGDDATLV
GAQVMVDSVD NVIIRNIIFE TAQDCFPQWD PTDGPEGNWN SEFDGVSVRR STHVWIDHNE
FSDGAVLDRD LPEYFGREFQ VHDGLLDITH GADLVTVSYN VLRDHDKTML IGSTDSPTYD
VGKLRVTLHH NRWENVLQRA PRVRYGQVHV YNNHYVIPAT PEGEKTYEYS WGVGVESALY
AENNYFDIDP SVDFSQVVAH WKGTQMYEKG SYANGRSRHH QVSFLDEYNA VHSPTIENKQ
TWSPPLHGRI DPTQSVPAKV QKAGVGHIL
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