Gene Tfu_0123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0123 
Symbol 
ID3579740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp145555 
End bp147840 
Gene Length2286 bp 
Protein Length761 aa 
Translation table11 
GC content71% 
IMG OID637683806 
Producthelicase, C-terminal:DEAD/DEAH box helicase, N-terminal 
Protein accessionYP_288184 
Protein GI72160527 
COG category[R] General function prediction only 
COG ID[COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0336832 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACCGTT GGGAGCCGGT TCTCCAACGG CTGCGGCGTG ACCATACCCG CACCGCGCAG 
GTGACCCATG TGGAAAGCCT GACGAATAGT CCCGGGGTGA GGGAGAACTG GCCGGGCTGG
GCGTCGCCTG CGGTGGTGGA ACGCATGGTC AAGTCAGGTG TAGCGAAGCC CTGGTCGCAC
CAGGTGCGGG CAGCGAACCT GGCTCACAGT GGCAGCAATG TGATCATAGC CACTGGCATC
TCTTCCGGGA AGTCGTTGGG TTTTCTGCTG CCGTGCACCG CGGCGATCGC CGAGGGCGGC
AGCGTGCTCT ACCTGGCTCC CACCAAAGCA CTCGCCGCCG ACCAGGAGCG CAAACTCGCG
GAGCTGGCGC TGCCCGGGGT GCGGGCTGCC GTCTACGACG GCGACACCCC GATGGAAGAA
CGGTCCTGGG CCCGGGCGCA CGCCAACTAC GTGCTGACCA ACCCTGACAT GCTGCACCGT
TCGATCGTGG CGCGCCACCC GGTCTGGGCG GGGTTTCTGC GCCGGCTCAG CTATGTCGTG
GTGGATGAGG CCCACCACTA TCGGGGAGTG TTCGGGTCGC ATGTCGCGCA GATCCTGCGG
CGGCTGCGGC GGGTGTGCGG CTGCTACGGT GCCGAGCCGC GGTTCATCCT GGCGTCGGCG
ACCACGGCGA CGCCGGCGGA GACAGCGCAG CAGCTCACCG GGCTTCCCGT GGTCGCGGTC
ACCGGGGACG GTTCGGCGCG CGCCTCGCTG CGGTTCGCTC TCGTGGAGCC GGAGCTGACG
GAGAAGACCG GGGAGCAGGG GGCGCCCCTG CGGCGCACGG CGACAGCGGT CGCCGCGGAA
CTGTTGGCTG ACCTGGTGTC CCATGAGGTG TCCACTCTGG TGTTCGTGCG GTCCCGGCAG
GCGGCTGAAC TGGTTGCGCT GGCGGCGCAG CGGGCACTGG CCGATGCGGG GCGCCCAGAG
CTGGCCCGGC GCGTAGCCGC GTACCGGGGC GGCTACCTGG CTGAGGACCG GCGGCGGCTG
GAGCAGCGCC TGCGGTCCGG GGAGCTGCTG GGACTGGCCA CCACCAACGC GCTTGAGTTG
GGGGTGGACG TGAGCGGACT GGACGCTGTG GTGCTCGCCG GCTGGCCGGG GACGCGGGCC
TCGCTGTGGC AGCAGGCCGG GCGGGCCGGC CGGAGCGGCC GTGACGCGTT GGCCGTGTTC
GTCGCACGGG ACGATCCGCT CGACACCTAC CTGGTCCACC ATCCCGACGC GATCTTCGGG
CAGGACGTGG AAGCGACGGT CCTGGACCCG GACAACCCCT ATGTGCTCGC CCCGCACTTG
TGTGCCGCAG CCGAGGAACT TCCGCTCGCC CCGGAAGAAC TGCCGATCTT CGGTCCGAAC
GCGTCCGATG TGGTTGCCGA GCTGGTGGGC CGAGGGCTGC TGCGCCGCCG CCCTCGAGGC
TGGTTTTGGA CGCGTCGGGA ACGGGCCTCC ACCTTGGCCG ATATCCGGGG GTCGGGCGGG
GCGCCGGTCC AGATCGTGGA CGAAGACAGC GGCGTGCTGC TGGGCTCCGT GGACGAGGCC
ACGGCGAGCT CGGCCGTGCA TCCCGGCGCG GTCTACCTGC ACCAAGGGTT CAGCTATGTG
GTCTCCGCGT TGGACTTGGA GAGCGGAATC GCCTTGGTGC GCGGCGAAGA CCCCGGCTAC
AGCACCTGGG CGCGGGAGGT CACCCACATC GACATCCTCA CCACCGCGCG CGAGGAGCGG
TGGGGGGAAG CCACAGTGTG CTTCGGGAAA GTGCGGGTGG CCCGCCAAGT GGTGAGCTAT
CTGAGACGCG ACCTGCGCAC CGGGGCGGTC CTGGACGAGC GTCCGCTGGA ACTGCCGGAG
CGGGTCCTGG AGTCGCAGGC GGTGTGGTGG ACGGTCGGTC CGGACGCTGA GGAACGGCTG
CGGGACGAAG GGGTGGAGCT GCGCGGCGCC GCCCACGCAG CCGAGCACGC GTCGATCGGC
CTGCTGCCGC TGTTCGCCAC CTGCGACCGG TGGGATATCG GCGGGGTGTC CACTGCGCTG
CACCCCGACA CCGGGCTGCT CACCGTCTTC GTCTACGACG GGCACGAGGG AGGCGCAGGG
TTCGCGGAAC GCGGCTACGC CGCTGCGCGG GACTGGTTGC GCGCCACACG GGACGCGATC
GCGGCCTGCG AGTGCGCTAC CGGGTGCCCG TCCTGCATCC AATCGCCCAA ATGCGGTAAC
GGCAACGAGC CGCTCAGCAA GCCGGGAGCG GTCCGGCTCC TGGACGCGCT GCTGGAAGCG
GCCTAG
 
Protein sequence
MNRWEPVLQR LRRDHTRTAQ VTHVESLTNS PGVRENWPGW ASPAVVERMV KSGVAKPWSH 
QVRAANLAHS GSNVIIATGI SSGKSLGFLL PCTAAIAEGG SVLYLAPTKA LAADQERKLA
ELALPGVRAA VYDGDTPMEE RSWARAHANY VLTNPDMLHR SIVARHPVWA GFLRRLSYVV
VDEAHHYRGV FGSHVAQILR RLRRVCGCYG AEPRFILASA TTATPAETAQ QLTGLPVVAV
TGDGSARASL RFALVEPELT EKTGEQGAPL RRTATAVAAE LLADLVSHEV STLVFVRSRQ
AAELVALAAQ RALADAGRPE LARRVAAYRG GYLAEDRRRL EQRLRSGELL GLATTNALEL
GVDVSGLDAV VLAGWPGTRA SLWQQAGRAG RSGRDALAVF VARDDPLDTY LVHHPDAIFG
QDVEATVLDP DNPYVLAPHL CAAAEELPLA PEELPIFGPN ASDVVAELVG RGLLRRRPRG
WFWTRRERAS TLADIRGSGG APVQIVDEDS GVLLGSVDEA TASSAVHPGA VYLHQGFSYV
VSALDLESGI ALVRGEDPGY STWAREVTHI DILTTAREER WGEATVCFGK VRVARQVVSY
LRRDLRTGAV LDERPLELPE RVLESQAVWW TVGPDAEERL RDEGVELRGA AHAAEHASIG
LLPLFATCDR WDIGGVSTAL HPDTGLLTVF VYDGHEGGAG FAERGYAAAR DWLRATRDAI
AACECATGCP SCIQSPKCGN GNEPLSKPGA VRLLDALLEA A