Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0123 |
Symbol | |
ID | 3579740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 145555 |
End bp | 147840 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637683806 |
Product | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal |
Protein accession | YP_288184 |
Protein GI | 72160527 |
COG category | [R] General function prediction only |
COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0336832 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACCGTT GGGAGCCGGT TCTCCAACGG CTGCGGCGTG ACCATACCCG CACCGCGCAG GTGACCCATG TGGAAAGCCT GACGAATAGT CCCGGGGTGA GGGAGAACTG GCCGGGCTGG GCGTCGCCTG CGGTGGTGGA ACGCATGGTC AAGTCAGGTG TAGCGAAGCC CTGGTCGCAC CAGGTGCGGG CAGCGAACCT GGCTCACAGT GGCAGCAATG TGATCATAGC CACTGGCATC TCTTCCGGGA AGTCGTTGGG TTTTCTGCTG CCGTGCACCG CGGCGATCGC CGAGGGCGGC AGCGTGCTCT ACCTGGCTCC CACCAAAGCA CTCGCCGCCG ACCAGGAGCG CAAACTCGCG GAGCTGGCGC TGCCCGGGGT GCGGGCTGCC GTCTACGACG GCGACACCCC GATGGAAGAA CGGTCCTGGG CCCGGGCGCA CGCCAACTAC GTGCTGACCA ACCCTGACAT GCTGCACCGT TCGATCGTGG CGCGCCACCC GGTCTGGGCG GGGTTTCTGC GCCGGCTCAG CTATGTCGTG GTGGATGAGG CCCACCACTA TCGGGGAGTG TTCGGGTCGC ATGTCGCGCA GATCCTGCGG CGGCTGCGGC GGGTGTGCGG CTGCTACGGT GCCGAGCCGC GGTTCATCCT GGCGTCGGCG ACCACGGCGA CGCCGGCGGA GACAGCGCAG CAGCTCACCG GGCTTCCCGT GGTCGCGGTC ACCGGGGACG GTTCGGCGCG CGCCTCGCTG CGGTTCGCTC TCGTGGAGCC GGAGCTGACG GAGAAGACCG GGGAGCAGGG GGCGCCCCTG CGGCGCACGG CGACAGCGGT CGCCGCGGAA CTGTTGGCTG ACCTGGTGTC CCATGAGGTG TCCACTCTGG TGTTCGTGCG GTCCCGGCAG GCGGCTGAAC TGGTTGCGCT GGCGGCGCAG CGGGCACTGG CCGATGCGGG GCGCCCAGAG CTGGCCCGGC GCGTAGCCGC GTACCGGGGC GGCTACCTGG CTGAGGACCG GCGGCGGCTG GAGCAGCGCC TGCGGTCCGG GGAGCTGCTG GGACTGGCCA CCACCAACGC GCTTGAGTTG GGGGTGGACG TGAGCGGACT GGACGCTGTG GTGCTCGCCG GCTGGCCGGG GACGCGGGCC TCGCTGTGGC AGCAGGCCGG GCGGGCCGGC CGGAGCGGCC GTGACGCGTT GGCCGTGTTC GTCGCACGGG ACGATCCGCT CGACACCTAC CTGGTCCACC ATCCCGACGC GATCTTCGGG CAGGACGTGG AAGCGACGGT CCTGGACCCG GACAACCCCT ATGTGCTCGC CCCGCACTTG TGTGCCGCAG CCGAGGAACT TCCGCTCGCC CCGGAAGAAC TGCCGATCTT CGGTCCGAAC GCGTCCGATG TGGTTGCCGA GCTGGTGGGC CGAGGGCTGC TGCGCCGCCG CCCTCGAGGC TGGTTTTGGA CGCGTCGGGA ACGGGCCTCC ACCTTGGCCG ATATCCGGGG GTCGGGCGGG GCGCCGGTCC AGATCGTGGA CGAAGACAGC GGCGTGCTGC TGGGCTCCGT GGACGAGGCC ACGGCGAGCT CGGCCGTGCA TCCCGGCGCG GTCTACCTGC ACCAAGGGTT CAGCTATGTG GTCTCCGCGT TGGACTTGGA GAGCGGAATC GCCTTGGTGC GCGGCGAAGA CCCCGGCTAC AGCACCTGGG CGCGGGAGGT CACCCACATC GACATCCTCA CCACCGCGCG CGAGGAGCGG TGGGGGGAAG CCACAGTGTG CTTCGGGAAA GTGCGGGTGG CCCGCCAAGT GGTGAGCTAT CTGAGACGCG ACCTGCGCAC CGGGGCGGTC CTGGACGAGC GTCCGCTGGA ACTGCCGGAG CGGGTCCTGG AGTCGCAGGC GGTGTGGTGG ACGGTCGGTC CGGACGCTGA GGAACGGCTG CGGGACGAAG GGGTGGAGCT GCGCGGCGCC GCCCACGCAG CCGAGCACGC GTCGATCGGC CTGCTGCCGC TGTTCGCCAC CTGCGACCGG TGGGATATCG GCGGGGTGTC CACTGCGCTG CACCCCGACA CCGGGCTGCT CACCGTCTTC GTCTACGACG GGCACGAGGG AGGCGCAGGG TTCGCGGAAC GCGGCTACGC CGCTGCGCGG GACTGGTTGC GCGCCACACG GGACGCGATC GCGGCCTGCG AGTGCGCTAC CGGGTGCCCG TCCTGCATCC AATCGCCCAA ATGCGGTAAC GGCAACGAGC CGCTCAGCAA GCCGGGAGCG GTCCGGCTCC TGGACGCGCT GCTGGAAGCG GCCTAG
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Protein sequence | MNRWEPVLQR LRRDHTRTAQ VTHVESLTNS PGVRENWPGW ASPAVVERMV KSGVAKPWSH QVRAANLAHS GSNVIIATGI SSGKSLGFLL PCTAAIAEGG SVLYLAPTKA LAADQERKLA ELALPGVRAA VYDGDTPMEE RSWARAHANY VLTNPDMLHR SIVARHPVWA GFLRRLSYVV VDEAHHYRGV FGSHVAQILR RLRRVCGCYG AEPRFILASA TTATPAETAQ QLTGLPVVAV TGDGSARASL RFALVEPELT EKTGEQGAPL RRTATAVAAE LLADLVSHEV STLVFVRSRQ AAELVALAAQ RALADAGRPE LARRVAAYRG GYLAEDRRRL EQRLRSGELL GLATTNALEL GVDVSGLDAV VLAGWPGTRA SLWQQAGRAG RSGRDALAVF VARDDPLDTY LVHHPDAIFG QDVEATVLDP DNPYVLAPHL CAAAEELPLA PEELPIFGPN ASDVVAELVG RGLLRRRPRG WFWTRRERAS TLADIRGSGG APVQIVDEDS GVLLGSVDEA TASSAVHPGA VYLHQGFSYV VSALDLESGI ALVRGEDPGY STWAREVTHI DILTTAREER WGEATVCFGK VRVARQVVSY LRRDLRTGAV LDERPLELPE RVLESQAVWW TVGPDAEERL RDEGVELRGA AHAAEHASIG LLPLFATCDR WDIGGVSTAL HPDTGLLTVF VYDGHEGGAG FAERGYAAAR DWLRATRDAI AACECATGCP SCIQSPKCGN GNEPLSKPGA VRLLDALLEA A
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