| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0109 |
|---|
| Symbol | |
|---|
| ID | 3579726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 132370 |
|---|
| End bp | 134775 |
|---|
| Gene Length | 2406 bp |
|---|
| Protein Length | 801 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637683792 |
|---|
| Product | PASTA |
|---|
| Protein accession | YP_288170 |
|---|
| Protein GI | 72160513 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.820003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGCAGA AACTCGGTCA GTTGTTCGGG GTCTCGGTCG CTGCCGGAGT ACTCGTGGCT
GCGCTCGCCG CTCCCGCCCT CGGCGGTATC GGCATCGCTG CCCGCAACGT AGCGACCGGC
TTCCTCAACA TGCCCAGCGA GCTAGAGACC CCGCCGCCGC CCCAACGCTC GATCATCTAC
GACGCAGAAG GCGGCGTCAT CGCTGAGGTG TACGACCGGA ACCGGGAACT GGTAGAACTC
GACCAGATCG CCCCGATCAT GCAGCAGGCG ATCATCGCCA TCGAGGACAG CCGGTTCTAC
GAGCACGGCG GCCTCGACAT CGTGGGCACC TTCCGCGCCG CCCTGCGCAC CATCGCCGGG
CGCACCCAAG GCGGCTCCTC CATCACCCAG CAGTACGTCA AAAACGTGCT GATCGAAAGC
GCCACATCCC AGGCGGAACA AGAAGAAGCC CGCGAAACCA CCCTGGGACG CAAGATCCGC
GAACTGCGCT ACGCCATCGC GCTCGAACAG CGGATGACCA AAGACGAAAT CCTCGAGGGC
TACCTCAACA TCGCCTACTT CGGGGACGGC GCCTACGGTG CCGAGTCCGC GGCCCAGCAC
TTCTTCAGCG TCAGCGCCAG CGAACTCAAC CTCAACCAGG CTGCCACCCT GGCCGGTCTC
GTCCGCTACC CCGAGCTGTA CAACCCCCGC CTCAACCCGG ACCAGGCCCA AGAACGGCGC
GACGTGGTCC TCGACCGGAT GGTCGCCACC GGGGTGATCA CCGAAGAAGA AGCCGAGAAG
ACCAAAGCGC AAGACCTGGA ACTCGACATC TCCACGCCCA GCAACGGGTG CATGCCCAGC
AAGCAGCCGT TCTTCTGCGA CTACGTGATC CAGGAGATCG AGAAGAACGA AGCGTTCGGG
GAGACCGAAA CCGAACGCGC CCGCTGGCTG CGCACCGCAG GCCTGGAGAT CTACACCACG
CTCGACCCCG ACATGCAGGA GGCTGGGCAG AAAGCCGTAG ACAAGTGGGT GCCGCGCAAG
AACGAAGCCC GCAAGGTCGC CGCCGAAGTC TTGATTGAAC CCGGCACCGG GGAGATCCGG
GCCATGGTGC AGAGCCGCAA CTACGGCCCC GACGAAAGCA AACTCGGCGA AACCTCCATC
AACTTCACAG CCAACGCCGA CCGCGGCGGC AGCACCGGCT TCCAAGCCGG CTCCACCTTC
AAAGCCATCA CCCTGGCCGC GGCCCTCGAA AAAGGACTGC CGTACAGCAC GTCCTTCACC
TCGGGCAGCA CCATCACTGT CACCGGCCAG AAGAACTGCG ACGGCAACAC TCTCGCCCCG
TGGACAGTGA GCAACTCCAG CGAAAGCGGC GGCGCCGCCA CCCACAACAT GGTGTCGGGC
ACCAAAGGCT CGGTGAACAC CTACTTCGCC CAACTGCAGA AACGGGTCGG CCTGTGCAAC
GTCATCAAAA TGGCGGAAAA ACTCGGCCTG ACCCGGGCCG ACGGCCAAAG CTACGACAAC
CCGCGCACCC AGGGGAACAA CTCCTTCACC CTGGGCAGTG AGGAAGTCTC CCCGCTGAAC
GTGGCCGCCG CCTACGCGAC CTTCGCCTCG CGGGGCATCT ACTGCAAGCC GATGGCGATC
ACCAAGATCG TCGACCGCCA GGCCGGGCGC ACCATCGAAA TGGAACCGGA GTGCGAACGG
CGCATCTCCA AAGATGTCGC CGACGGCGTG AACTACCTGC TCCAGCAGAC CTTCAAAGGC
GGCACCGCCA CCGGACTGGG TATCGGCCGC CCTGCCGCCG GAAAGACGGG AACCACCGAC
AACTCGGCGA GCGCCTGGTT CGCGGGCTAC ACCCCGAACC TGGCCGGCGC CGTGTTCGTC
GGCGACCCGC GCGGCCCCAA CCAGTACCCG CTGCGGAACG TCACCCTCGG CGGACGCTAC
TACTCGGTGG TCTACGGCGC GACCATCCCC GGTCCGATCT GGCAGGAAAC CATGCGGGAA
GCCGTGAAGA AACTGGACGA GAAGAGCTTC GCACGGTCGC CCGCACGGTT CGGCTCCACC
AGCGAACCCG CGCCGCCACG ACGAGAGGAC CCCACGGACG CCAACCCGGC TTCCAGCCCG
GGAAGCGTAC CCAACGTGGT TGGCATGTCC CGTGACCAAG CGGTAGCCGC CATCGAATCC
GCCGGCTACC GGGCGAACGT GGCCGACCGG CGGCTGCCGT CCAGCCACCC GGAAGGCACC
GTGGCCCTCG TCGAGCCTTC CGCGGGCTCC CGCCTCGCCG AAGGCTCCGT CGTCAACATC
TTCCTGAGCC GCGGCCCCGC CGACAACGGC AACAGCAACG GCGGCAACGG CAACGGCGGC
TGGGAATTCC CCGGCGGAGG CGGCTGGGAG CTCCCCGCCT TAGATGACCA GTGGGGCGCG
TTCTAG
|
|---|
| Protein sequence | MLQKLGQLFG VSVAAGVLVA ALAAPALGGI GIAARNVATG FLNMPSELET PPPPQRSIIY
DAEGGVIAEV YDRNRELVEL DQIAPIMQQA IIAIEDSRFY EHGGLDIVGT FRAALRTIAG
RTQGGSSITQ QYVKNVLIES ATSQAEQEEA RETTLGRKIR ELRYAIALEQ RMTKDEILEG
YLNIAYFGDG AYGAESAAQH FFSVSASELN LNQAATLAGL VRYPELYNPR LNPDQAQERR
DVVLDRMVAT GVITEEEAEK TKAQDLELDI STPSNGCMPS KQPFFCDYVI QEIEKNEAFG
ETETERARWL RTAGLEIYTT LDPDMQEAGQ KAVDKWVPRK NEARKVAAEV LIEPGTGEIR
AMVQSRNYGP DESKLGETSI NFTANADRGG STGFQAGSTF KAITLAAALE KGLPYSTSFT
SGSTITVTGQ KNCDGNTLAP WTVSNSSESG GAATHNMVSG TKGSVNTYFA QLQKRVGLCN
VIKMAEKLGL TRADGQSYDN PRTQGNNSFT LGSEEVSPLN VAAAYATFAS RGIYCKPMAI
TKIVDRQAGR TIEMEPECER RISKDVADGV NYLLQQTFKG GTATGLGIGR PAAGKTGTTD
NSASAWFAGY TPNLAGAVFV GDPRGPNQYP LRNVTLGGRY YSVVYGATIP GPIWQETMRE
AVKKLDEKSF ARSPARFGST SEPAPPRRED PTDANPASSP GSVPNVVGMS RDQAVAAIES
AGYRANVADR RLPSSHPEGT VALVEPSAGS RLAEGSVVNI FLSRGPADNG NSNGGNGNGG
WEFPGGGGWE LPALDDQWGA F
|
|---|
| |