| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0080 |
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| Symbol | |
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| ID | 3579714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 100065 |
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| End bp | 102011 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637683761 |
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| Product | GAF domain-containing protein |
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| Protein accession | YP_288141 |
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| Protein GI | 72160484 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2508] Regulator of polyketide synthase expression |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.920818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCGCG AGCTGAACAA CACCCCGGTT CCCCCCGAAG ACGACCCGTG GGCGGTAGAC
GCCCAGTCGG CCTTCCTGGA ACTTTTGCTG CGCGACGCTC CCGCGGTCGA ATACGAACGG
CCGCTGCTGG AAGCCCGTGC CCGCGGGGAC ACCCCGGAAA CCCTGGCCCG GTTGGAACGC
GCCAAACTCC TGGCGCTACG GGTCCGCTCC GTCCTCCGCG ACCTGCAGCG CCGCGAATCC
GAACTCACGG CCCTGTTCGA AACCGCTAAC GACCTGACCG GGATGCGCAG CCTCGACCAG
ATGCTGCGCG CCATCGTGGA CCGGGCCCGC CACCTCCTCA ACACCGACGT CGCCTATCTG
ACACTCAGCG ACCCGGAACG CGGGGACACC TACATGCGGG TGACGTCCGG TTCCGTCTCA
GCCCGCTTCC AGCAGCTACG CCTCGGCCAC GGGGAAGGTC TGGGCGGCCT GGTCGCCCAG
ACCGCCCTCC CCTATGTCAC CGCCAACTAC TTCGCGGACA CCCGGTTCCA GCACACCGAG
CACATCGACG CGGGGGTGCG CGAAGAAGGC CTGGTCGCGA TCCTCGGCGT GCCGCTCCAA
CTCAACGGCC GTGTCATCGG CGTCCTGTTC GCCGCCAACC GGCGGGAACG GCCGTTCTCC
CACGCGGAAG TAGCCCTGTT GAGCTCGCTG GCCACGCACG CGGCGATCGC TATCGACAAC
GCCAACCTCA TCGACGACAC CCGGCGGGCG CTCGCCGAAC TCAACACCGT CAACCAGCGG
CTCCAAGAAC ACACCGAATC CGTGGAACGC GCCGCGGCAG CCCACGACCG GCTCACCGAC
CTCGTGCTGC GCGGCGGCGG GATCGAAGAA GTCGCGGCCG CAGTCGGCGA CGTCCTCGGC
GGCCAAGTGT GCATCCACGA CCTCAACACG GCCGCCACTC CCCCGCCCTG CTGCGAGGAC
CCTGCCGTTG CCGAAGCCGT GCAGACCGCG CTGCACAGCG GCCGCACCGC CCGCGCCGGG
GATGCGTGGG TGGCAGCGGC CGCAGCCGGC AGTGAACTGC TCGGCATGCT CGTCCTGCGC
GGCATCGAAC CCGACATCAC CGGCCAGCGC ATCCTGGAAC GCGCCGCCGT CGTCACCGCG
CTGCTGCTGC TCATCCGCCG TTCCGCAACC GAAGCGGAGC ACCGGGTCCG CGGCGACCTG
CTCGACGAAC TCTTGGACAC CCCGGACCGG GACCCCGAGT CGCTGCGGCA GCGCGCGGCC
CGCCTCGGCG CGGACCTCAC CGTCCCCCAC GTGGTTGCGG TCGCGGAATC CCCCGGTGCT
GATGTGGGGC GGCTGCGCCT CGCCGCCATG CACATCGCTG AAACCACGGG CGGGCTCGCC
GGGATCCGCG GCGGCCGGGT CGTGCTCGTC CTGCCCGGCA CCGACCCCAC CACGGTGGGC
CGCCGTATCG GCGCTGACCT GGGGGTCGCG GTCAACGGTC CGGTGACCGT GGGGGTGGCG
GGGCCGGTCG AAGCCCTGCC CGGATTCCGG TCCTCGTTCA CCGAGGCGCT GCGCTGCCTG
CAAACCCTGC AGGCCCTGGG TCGCACCGGG GAAGTCGCCG CCCCCACCGA CCTAGGGTTC
CTCGGGCTGC TGCTCGGTGA CGACCGGGAC GTCGACGGGT TCGTCACCGC CACCCTGGGC
CCGCTGCTGG ACTACGACGC CCGCCGGAAG ACCGCGCTCG TGGACACGCT GCGCGCCTAT
TTCGCGGCGG GCGGCAACCT GTCGCGCGCC AAAGACGCGC TGCACGTCCA CGTCAACACG
GTCTCCCAGC GGTTGGAGCG GATCTCCCAG CTCATCGGCG ACGACTGGCA GGAGCCCAGC
CGGGCCTTGG AGATCCAGCT AGCGCTCCGC CTCCATGGTC TGCTGGACCG CGGTGTGGAT
TTGGGCGGCA ACCGTGGCCG CGGTTGA
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| Protein sequence | MERELNNTPV PPEDDPWAVD AQSAFLELLL RDAPAVEYER PLLEARARGD TPETLARLER
AKLLALRVRS VLRDLQRRES ELTALFETAN DLTGMRSLDQ MLRAIVDRAR HLLNTDVAYL
TLSDPERGDT YMRVTSGSVS ARFQQLRLGH GEGLGGLVAQ TALPYVTANY FADTRFQHTE
HIDAGVREEG LVAILGVPLQ LNGRVIGVLF AANRRERPFS HAEVALLSSL ATHAAIAIDN
ANLIDDTRRA LAELNTVNQR LQEHTESVER AAAAHDRLTD LVLRGGGIEE VAAAVGDVLG
GQVCIHDLNT AATPPPCCED PAVAEAVQTA LHSGRTARAG DAWVAAAAAG SELLGMLVLR
GIEPDITGQR ILERAAVVTA LLLLIRRSAT EAEHRVRGDL LDELLDTPDR DPESLRQRAA
RLGADLTVPH VVAVAESPGA DVGRLRLAAM HIAETTGGLA GIRGGRVVLV LPGTDPTTVG
RRIGADLGVA VNGPVTVGVA GPVEALPGFR SSFTEALRCL QTLQALGRTG EVAAPTDLGF
LGLLLGDDRD VDGFVTATLG PLLDYDARRK TALVDTLRAY FAAGGNLSRA KDALHVHVNT
VSQRLERISQ LIGDDWQEPS RALEIQLALR LHGLLDRGVD LGGNRGRG
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