Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0047 |
Symbol | dnaE |
ID | 3579042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 49207 |
End bp | 52773 |
Gene Length | 3567 bp |
Protein Length | 1188 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637683727 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_288108 |
Protein GI | 72160451 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.55181 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACGAACG ATCCCTTCGT CCACCTTCAC GTCCACACCG AGTATTCGAT GCTGGACGGT GCCGCCAAGC TCAAGCCGCT GTTCGAGGAA GCTGCCCGGT TGGGCATGCC TGCCGTGGCG ATGACGGACC ACGGAAACAT GTTCGGGTCT TACGAGTTCT GGCAGACCTC CAAGGAGTCG GGGGTCAAGC CGATCATCGG GATCGAGGCG TATGTGGCGC CCGAGTCCCG CTTCCACAAG CAGCGTGTGT TCTGGGGGAC GGGAAAGACC GGCGACGAGG CTGCTGAGGG TGGCAAGGAC GTTTCTGGCG GCGGCCGCTA CCTGCACTTG ACCATGTGGG CGCGGAACGC GAAAGGGCTG CGCAACCTGT TCCGGTTGTC GTCGCTCGCG TCTTTCGAGG GCTACTACAC CAAACCGCGC ATGGACTTGG AGCTGATGGC CCAGTACAGC GAGGGCATCA TGGTCACCAC CGGGTGCCCG TCGGGTGGGG TGCAGACCCG GCTGCGGCTC GGCCAGGAGC GGGAGGCTAT CGAATACGCG GGCAAGCTCC GGGATATTTT CGGTCGCGAC TCCGTGTTCG TGGAGTTGAT GGACCACGGT CTGGATATTG AGCGGGAAGT CCGCTCCGGC TTGTTGACTG TGGCGAAGAA GCTCGGCCTG CGGCCCGTGG TCACCAACGA CTCCCACTAT GTGACCGAGG ACCAGGCGGC CGCGCATGAC GCGCTGCTGG CCGTGGGTGT GGGCAAGAAC CTCGACGACC CTACGCGTTT CCGGTTCAAC GGCACCGGCT ACTACCTCAA AAGCGCAGAA GAGATGCGGT CCCTCAACAC GTTCGACGAA TGGTTGGAGG GGTGCCGCAA CACGCTGTGG ATCGCCGAGC AGGTGGAGGA CGGCGCATAC GACGACGTGT TCCGCCCCCG GGACTTGATG CCGAAGTTCC CGGTGCCGGA AGGGGAGACG CAGGCGAGCT GGCTGCGCAA GGAGATTGAA CGCTGCATCC CGAACCGGTA CCCCAACGGG CCGAGCCGGG AAGTGCGGGA ACGTATCGAA CACGAGTTGA GCATCATCGA GCGGATGGGG TTCCCCGCCT ACTTCCTGGT GGTGGCGGAC ATCTGCCAGT ACGCGCGGCG TTCGGGGATC GCGCTGGGGC CGGGGCGTGG TTCGGCGACC GGGTCGATGG TGGCCTACGT GCTCGGGATC ACCGACTTGG ACCCGTTGGA GCACTCGCTG CTGTTTGAAC GGTTCCTCAA CCCCGAGCGT GTGTCGATGC CTGACATCGA CTTGGACTTC GACGAACGTA AGCGCGGCGA CATGATCCGC TACGTGACGG AACGCTACGG GGAGGACCGG GTCGCGCAGA TCCTCACGTT CGGCACGATT AAGGCGAAGG CTGCGATCAA GGACGCGACG CGGATCCTCG GCTACCCGTA CGCGCTCGGT GACAAGATCA CGAAGGCGTT CCCGCCGGCG GTGGGTGGTA AAGAGATTCC GCTGTCCGCG GTCTTCGACG AAAGCCACCC CCGCTACAAC GAGGCGGCTG AGCTGCGGCA GCTCATCGAA TCCAACCCGG ACGTCCGCAA GGTGTATGAG ACTGCAAGCG GTCTGGAAGG GCTGACCCGG GGCACGGGTG TGCACGCGGC GGGTGTGATC CTCTCCGCTG AGCCGCTGCT CGATGTGATC CCGCTGCACA AGCGGGAGAC GGACGGGGCC ATCATCACAG GCTTCCCCTA TCCCCAGTGC GAGGAGATGG GCCTGTTGAA GATGGACTTC CTGGGGTTGC GGAACCTGAC GGTCATCGAC GACGCGATCC AGAACATCAA GGCCAACGAG GGCAAGGAGA TCAACCTGTC CGCCCTGCCG TTGGACAACA AGAAGACGTA TGAGCTGCTG TCGCGCGGGG ACACGCTCGG CGTGTTCCAG CTCGACGGTG GTCCGATGCG GGCGCTGCTC AAGCGGATGG AGCCGAAGAA GTTCGGTGAC ATTGCCGCTG TGCTCGCCCT GTACCGGCCT GGTCCGATGG CGGCGAACGC GCACAACGAC TATGCGGACC GGTCGAACGG GCGCCAGGAG ATCACTCCGA TCCACCCGGA GCTGAAGGAG GCGTTGGACC CGATCCTCGC CGAGTCTTTC CACCTGATCG TCTACCAGGA GCAGGTGATG GCGATCGCCC AGCAGCTCGC CGGGTACACG CTGGGCGGCG CGGACTTGTT GCGCCGCGCG ATGGGGAAGA AGAAGAAGGA GGCCCTGGAG AAGGAGTACA CCAAGTTCTC CGAAGGCATG CTGTCCCGGG GCTTCTCCAA GGAGGCCATG CAGGCCTTGT GGGACGTGAT GCTTCCCTTC TCCGGCTACG CGTTCAACAA GTCGCACACG GCCGGGTACG GGATGATTTC TTATTGGACC GCCTATTTGA AGGCGAATCA CCCGGCGTCC TACATGGCGG CTCTGCTCAC GTCGGTGGCG GACGACAAGG ACAAGATGGC TGTCTATCTG GCGGAGTGCC GGAAGATGGG CATCCGGGTG CTGCCGCCGG ACGTCAACGA GTCGGGTCTG CAGTTCACCC CGGTCGGCAA CGACATCCGT TTCGGGTTGG GCGCGGTCCG CAACGTGGGC GCCAACGTGG TGGAGTCGAT CCTCAAGACC CGTGAGGAGA AGGGGAAGTT CACGTCGTTT GTAGACTTCC TGTCGAAGAT TGAGCTGACG GTCTGCAACA AGCGGGTCAT CGAGTCGCTG ATCAAGGCGG GGGCGTTCGA CTCGCTCGGC CACTCTCGCC TGGACTTGTA CCGGCACCAC GAGGCCGCGG TGGATGCGGT GCTCAGTTCG AAGAAGCAGG AGGCGCACGG CCAGTTCGAC CTGTTCGGCG GGGGTGACGA GGAGGACGGC GGGGAGAGCG CGCCGCTGGG CTTCTCCATC AACTGGACGG GTGAGGAGTG GGACCGGAAG ACCAAGCTCG CGTTTGAGCG GGAGATGCTC GGCTTGTACG TGTCCAGCCA TCCTTTGGCG GGGGCCGAGC GGATTCTGGC GCGGGCTAGT GACGCCCCGC TGCTGGACGT GGTGAACGGG GAGCGCCGCA ACAACGACGA GGTGCGGATT GCGGGCTTGA TCTCCAAGGT GGAGAAGCGC ATCAACAAGG CGGGCAACCA GTGGGCGATC GCCACGGTCG AGGATTTGGA CGCTTCTATT GAGGCTTTGT TCTTCCCCAA GGTGTATCCG CTGTATGTGG ACGCTTTGGT GGAGGACACC GCGGTGTCGA TCAAGGGGCG GCTCAACGAC CGGGACGGCA CCTTCTCCCT CTTCGTGTCC GAGATGTCGA TTTTGGACAT TTCCCATGTG TCTGAGGGGG AGCCGCCGGT TCTGTTGACT ATTCCGGAGA AGAGGGTCAC CCGGGAGTTG ATCAGCGAGC TGAAGCAGAC GCTGCGCAGC CACCGGGGGG ACACGCCGGT GCGGATCCGG GTGGACAACC CGCGGCGGTC GCGGATTTTC GCGATCGACG ACTATCCGGT GCGGGTCAGC CCGGAGTTTT CGGGTGAGGT GAAGAGCCTG CTGGGACCGG AGTCGATCAC CTACTGA
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Protein sequence | MTNDPFVHLH VHTEYSMLDG AAKLKPLFEE AARLGMPAVA MTDHGNMFGS YEFWQTSKES GVKPIIGIEA YVAPESRFHK QRVFWGTGKT GDEAAEGGKD VSGGGRYLHL TMWARNAKGL RNLFRLSSLA SFEGYYTKPR MDLELMAQYS EGIMVTTGCP SGGVQTRLRL GQEREAIEYA GKLRDIFGRD SVFVELMDHG LDIEREVRSG LLTVAKKLGL RPVVTNDSHY VTEDQAAAHD ALLAVGVGKN LDDPTRFRFN GTGYYLKSAE EMRSLNTFDE WLEGCRNTLW IAEQVEDGAY DDVFRPRDLM PKFPVPEGET QASWLRKEIE RCIPNRYPNG PSREVRERIE HELSIIERMG FPAYFLVVAD ICQYARRSGI ALGPGRGSAT GSMVAYVLGI TDLDPLEHSL LFERFLNPER VSMPDIDLDF DERKRGDMIR YVTERYGEDR VAQILTFGTI KAKAAIKDAT RILGYPYALG DKITKAFPPA VGGKEIPLSA VFDESHPRYN EAAELRQLIE SNPDVRKVYE TASGLEGLTR GTGVHAAGVI LSAEPLLDVI PLHKRETDGA IITGFPYPQC EEMGLLKMDF LGLRNLTVID DAIQNIKANE GKEINLSALP LDNKKTYELL SRGDTLGVFQ LDGGPMRALL KRMEPKKFGD IAAVLALYRP GPMAANAHND YADRSNGRQE ITPIHPELKE ALDPILAESF HLIVYQEQVM AIAQQLAGYT LGGADLLRRA MGKKKKEALE KEYTKFSEGM LSRGFSKEAM QALWDVMLPF SGYAFNKSHT AGYGMISYWT AYLKANHPAS YMAALLTSVA DDKDKMAVYL AECRKMGIRV LPPDVNESGL QFTPVGNDIR FGLGAVRNVG ANVVESILKT REEKGKFTSF VDFLSKIELT VCNKRVIESL IKAGAFDSLG HSRLDLYRHH EAAVDAVLSS KKQEAHGQFD LFGGGDEEDG GESAPLGFSI NWTGEEWDRK TKLAFEREML GLYVSSHPLA GAERILARAS DAPLLDVVNG ERRNNDEVRI AGLISKVEKR INKAGNQWAI ATVEDLDASI EALFFPKVYP LYVDALVEDT AVSIKGRLND RDGTFSLFVS EMSILDISHV SEGEPPVLLT IPEKRVTREL ISELKQTLRS HRGDTPVRIR VDNPRRSRIF AIDDYPVRVS PEFSGEVKSL LGPESITY
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