Gene Tfu_0001 details

Gene Information

• Locus tag: Tfu_0001
• Symbol: dnaA
• ID: 3579552
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 195
• End bp: 2042
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637683681
• Product: chromosomal replication initiation protein
• Protein accession: YP_288064
• Protein GI: 72160407
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0593] ATPase involved in DNA replication initiation
• TIGRFAM ID: [TIGR00362] chromosomal replication initiator protein DnaA

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000000479277
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTGAGG GACAGATCAA CCTCGCGATG GTGTGGTCGA GAGTGCTGGA CAACCTCGAC 
AACAACAGCC TTCCTCCCCA GCACCGGGCC TGGCTGCCGC AGACCCGGCC CCTGGGGCTC 
ATCGAGGACA CCGCACTGCT CGCCGCCCCC AACGAATTCG CCAAGGAAAT CCTGGAAACC 
CGGCTGCGGA CGGTCATCAG CCAGGCGCTC TCCGCCGAAC TCGGCCGGGA GATCCGGGTC 
GCTGTCACCG TGGATCCCAG CGCGGTGCCG CCGTCCGCGC CCACCGAGGA AGCGTCGAGC 
ACCAGCAGCC CAGACAGCTC GCACCCGGCT CCCGACCAGG GCTCGGCCAG CTACTCCGGG 
CCTCGCGACA CGGCGCGGCA GCAGGCGTGG TCCCAGCAGC CTGTGCTGCC TGATCCACAG 
CCCACCGCGC CCCAGTTCAC CCCGTCGGGA CGGCCGGGCC CGCTGCCGGG CGAGCCGTTC 
TCCCGCGGCC CAGACCTGCT GTCCTCGGGG TGGAACCCCT CCTCGGCCGA CCCCGGCAGT 
CCTGCATCCC CTGCCCCGGT CGCCGAGTCC GACACCGGCC CGCGCTACCA GAGCTGGGAC 
ACGTCGGCTC CCCACTGGGA CCAACCCAAC CGCTGGGAGA CGCCGCGCCC GTGGGAAGGC 
GGCCCCCACC CCGGTGCCGG AAACCGTCCG CACGACGTCG GCGGCGACTC TGGCGTGCCT 
TCCGCAGAGC AGCCGCCGGT CACTCCGCCG CTGGGCGTGA CCGAGCGGGG GGACGGGTCG 
ACCAACCCCA CGTCAGGCGG CCCGGACCAG CTCAACCCCA AGTACACCTT CGACACGTTC 
GTCATCGGCT CCAGCAACCG CTTCGCGCAT GCCGCCGCGG TCGCCGTAGC CGAGGCCCCC 
GCCAAGGCCT ACAACCCGCT GTTCGTCTAC GGCGGCTCCG GGCTGGGCAA GACCCACCTG 
CTCCACGCGA TCGGCCACTA CACCCAGCGG CTCTACGAGG GCGCGCGGGT CCGCTACGTC 
AGCTCGGAAG AGTTCACCAA CGAATTCATC AACTCCATCC GGGACGGCAA AGCGGACGGG 
TTCCGCCGCC GCTACCGGGA CATCGACGTC CTCCTGGTCG ACGACATCCA GTTCCTGGAG 
AACAAGGAGC AGACGCAGGA GGAGTTCTTC CACACCTTCA ACACCCTGCA CAACTCCAAC 
AAGCAGATCG TCATCTCCTC GGACCGGCCG CCCAAGCAGC TCGTTACCTT GGAGGACCGG 
CTGCGCAACC GGTTCGAATG GGGGCTGATC ACCGACGTCC AGCCCCCGGA GTTGGAGACC 
CGGATCGCGA TCCTGCGGAA GAAGGCCGCC CAGGAGGGAC TCAACGCTCC CCCGGAGGTG 
CTGGAGTTCA TCGCCAGCAA GATCTCCACC AACATCCGGG AGCTGGAGGG GGCGCTCATC 
CGGGTCACCG CGTTCGCGAG CCTGAACCGG CAGTCGGTCG ACCTGCACCT GACCAGCATC 
GTGCTGCGGG ACCTGATCCC CAACGACGAA GTCCCAGAGA TTACGGCCGC CGAAATCATG 
GCCCAGACCG CTTCATATTT CGGGTTGACC CCCGAGGACC TGTGCGGCAC TTCCCGCTCA 
CGGGTGCTGG TCACCGCGCG GCAGATCGCC ATGTACCTGT GCCGGGAGCT GACCGACCTG 
TCCCTGCCCA AGATCGGGCA GCAGTTCGGT CGGGACCACA CCACAGTGAT GCACGCGGAC 
CGCAAGATCC GCTCGCTCAT GGCGGAGCGG CGCTCGATCT ACAACCAGGT CACCGAGCTC 
ACCAACCGCA TCAAGCAGCA GGCCCACCAC AACCACCACC ATCTGTGA 

 

Protein sequence

MSEGQINLAM VWSRVLDNLD NNSLPPQHRA WLPQTRPLGL IEDTALLAAP NEFAKEILET 
RLRTVISQAL SAELGREIRV AVTVDPSAVP PSAPTEEASS TSSPDSSHPA PDQGSASYSG 
PRDTARQQAW SQQPVLPDPQ PTAPQFTPSG RPGPLPGEPF SRGPDLLSSG WNPSSADPGS 
PASPAPVAES DTGPRYQSWD TSAPHWDQPN RWETPRPWEG GPHPGAGNRP HDVGGDSGVP 
SAEQPPVTPP LGVTERGDGS TNPTSGGPDQ LNPKYTFDTF VIGSSNRFAH AAAVAVAEAP 
AKAYNPLFVY GGSGLGKTHL LHAIGHYTQR LYEGARVRYV SSEEFTNEFI NSIRDGKADG 
FRRRYRDIDV LLVDDIQFLE NKEQTQEEFF HTFNTLHNSN KQIVISSDRP PKQLVTLEDR 
LRNRFEWGLI TDVQPPELET RIAILRKKAA QEGLNAPPEV LEFIASKIST NIRELEGALI 
RVTAFASLNR QSVDLHLTSI VLRDLIPNDE VPEITAAEIM AQTASYFGLT PEDLCGTSRS 
RVLVTARQIA MYLCRELTDL SLPKIGQQFG RDHTTVMHAD RKIRSLMAER RSIYNQVTEL 
TNRIKQQAHH NHHHL