Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_4154 |
Symbol | |
ID | 3566615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 4452193 |
End bp | 4452849 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637682626 |
Product | ribosomal large subunit pseudouridine synthase A |
Protein accession | YP_287350 |
Protein GI | 71909763 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 0.229307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGATCG CTTATTTGCC GCCACCGGCC GGTATTTCGC CGGTCATTTT TGCCGATGAG TGGCTGATTG TTGCCGACAA GCCGGCCGAG CTTCTGTCCG TGCCCGGTCG GGGTGCTGGC ATGGACGATT GCCTGGTGAC ACGCGTCCAG AACGAATACC CGGATGCGCT CAGCGTCCAT CGACTGGATA TGTCCACCTC CGGCCTGCTG GTCCTGGCCC GCGGCAAGGA AATACACCGG CAGCTGTCAC GTCTGTTTCA GGACAGGCAG GTCAGCAAGC GCTATATCGC TGTCGTCGAT GGACTGCTGG CCGAGGAGGT CGGCGAGATT GATCTGCCCC TGATCTGCGA CTGGCCGAAC CGCCCCCGGC AAATGGTGGA CTTCACGATC GGCAAACCCT CGTTGACGCG CTTTCGCGTC AACGGCCACG ACACGGTCGC CAATACGACA CGCCTTGAAT TGGAACCGAT CACTGGCCGC TCGCACCAAT TGCGTGTTCA TATGGCCTCG CTCGGCCACC CAATCCTGGG CGACGACCTC TATGGCGGCG AGGCCCATGG CAAGGCCGGG CGTCTGTTGT TGCACGCCAT GGATCTGGCC TTTGTCCACC CGGCAACCGG CAGCCCCGTG CAATTTCACA GTGACGCGCC GTTTTGA
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Protein sequence | MAIAYLPPPA GISPVIFADE WLIVADKPAE LLSVPGRGAG MDDCLVTRVQ NEYPDALSVH RLDMSTSGLL VLARGKEIHR QLSRLFQDRQ VSKRYIAVVD GLLAEEVGEI DLPLICDWPN RPRQMVDFTI GKPSLTRFRV NGHDTVANTT RLELEPITGR SHQLRVHMAS LGHPILGDDL YGGEAHGKAG RLLLHAMDLA FVHPATGSPV QFHSDAPF
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