Gene Daro_4154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_4154 
Symbol 
ID3566615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp4452193 
End bp4452849 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content62% 
IMG OID637682626 
Productribosomal large subunit pseudouridine synthase A 
Protein accessionYP_287350 
Protein GI71909763 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value0.229307 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGATCG CTTATTTGCC GCCACCGGCC GGTATTTCGC CGGTCATTTT TGCCGATGAG 
TGGCTGATTG TTGCCGACAA GCCGGCCGAG CTTCTGTCCG TGCCCGGTCG GGGTGCTGGC
ATGGACGATT GCCTGGTGAC ACGCGTCCAG AACGAATACC CGGATGCGCT CAGCGTCCAT
CGACTGGATA TGTCCACCTC CGGCCTGCTG GTCCTGGCCC GCGGCAAGGA AATACACCGG
CAGCTGTCAC GTCTGTTTCA GGACAGGCAG GTCAGCAAGC GCTATATCGC TGTCGTCGAT
GGACTGCTGG CCGAGGAGGT CGGCGAGATT GATCTGCCCC TGATCTGCGA CTGGCCGAAC
CGCCCCCGGC AAATGGTGGA CTTCACGATC GGCAAACCCT CGTTGACGCG CTTTCGCGTC
AACGGCCACG ACACGGTCGC CAATACGACA CGCCTTGAAT TGGAACCGAT CACTGGCCGC
TCGCACCAAT TGCGTGTTCA TATGGCCTCG CTCGGCCACC CAATCCTGGG CGACGACCTC
TATGGCGGCG AGGCCCATGG CAAGGCCGGG CGTCTGTTGT TGCACGCCAT GGATCTGGCC
TTTGTCCACC CGGCAACCGG CAGCCCCGTG CAATTTCACA GTGACGCGCC GTTTTGA
 
Protein sequence
MAIAYLPPPA GISPVIFADE WLIVADKPAE LLSVPGRGAG MDDCLVTRVQ NEYPDALSVH 
RLDMSTSGLL VLARGKEIHR QLSRLFQDRQ VSKRYIAVVD GLLAEEVGEI DLPLICDWPN
RPRQMVDFTI GKPSLTRFRV NGHDTVANTT RLELEPITGR SHQLRVHMAS LGHPILGDDL
YGGEAHGKAG RLLLHAMDLA FVHPATGSPV QFHSDAPF