| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_4149 |
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| Symbol | |
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| ID | 3566649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4448008 |
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| End bp | 4449477 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637682621 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_287345 |
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| Protein GI | 71909758 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 65 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCCG CTCTCCAGCT AAAACTATCC CAGCATCTGG CGCTGACTCC TCAGCTCCAG
CAGTCGATCA AGCTACTTCA GTTGTCGACG GTGGAAATGC AACAGGAAAT CGAGCGTTAT
CTGCTCGAAA ATCCCATGCT GGAACGCGAA GACGAGCATG GCGGGGATAA TTTCTCAGCC
GCCCAGCAGT TCGACGCGCC CCAAAGCAAC GAAGGTGAGC GCGAGCAAAA GGTTGAGCGG
GAAGAACGGG ATGCCCGCGA GGAACGCGAG CAGGATGTGC CATCGGCTCC GTCGGAGGTG
GACGATGACC GCTGGGCCTC CGATGCCGGG ACCTTTACCG GCGCCGGTCG CGATGAAGAC
GACGATAGCG ATTCCCGCGA CATCCATGCG GCCAACGTCA GCCTGCGTGA CCATCTGGGC
TGGCAACTGG GCATGACCCA GCTATCGGAG CGCGACCGCA GTCTGGTGCG TTTCCTGATC
GAAGCACTCG ATGATGATGG CTATCTCTCG GCGCCGCTGG TCGAGTTGTG GGAAACCCTG
CCGCCGGAAT ACGAAATTGA AATCGAAGAG CTGGAAATTG CGCTGCGCCA TATCCAGAAT
TTCGACCCGA TCGGCATTGG TGCCCGCAGT CTTCAGGAAT GCCTGCAGCT TCAGCTCAAG
GTTTTGCCGG TATGTGCCGA ACGTACACTG GCCCTGGCTA TTGTCGACAA GCATCTCGAA
CTGCTCGCCG CCCGTGATTT CGCCAAGATT CGTCGTCTGA CAGGTTGCGA TGACGAGGCT
TTGAAGGCGG CGCACAGCCT GATCACCAGC CTCAACCCAC GGCCAGCTGC CGGGTATGCC
CAGATTGAAG CGCGCTACAT CACGCCGGAT GTGATCGTGA AGAAGCTAAA GGGCAAGTGG
ACCGCCTACA TCAATCCGGA TGCCTACCCT CGGTTGCGCA TCAACCGTCT GTATGCCGAA
ATTCTCGCCA AGCAGCGGCG GGGCAACGGC AATCTATCTA CGCAGTTGCA GGAGGCGCGC
TGGCTGATCA AGAATGTCCA GCAGCGCTTC GAAACCATAC ACCGTGTCAC GCAGACCATT
GTCGATCGCC AGCGCCAGTT CTTCGAACAC GGCGAAGTGG CCATGCGGCC GCTGGTGCTG
CGTGAAATCG CCGATATTCT CGGCCTGCAC GAGTCGACTG TATCGCGGGT GACCAGCCAG
AAATACATGG CGACACCGCG CGGTATCTTC GAACTGAAAT ACTTCTTTGG CAGCCATGTC
TCCACCGATA GCGGTGGTGC TTGTTCTGCT ACGGCCATCC GCGCCCTGAT CAAGCAATTG
ATTGCGGCTG AGGATGGCAA GAAGCCCTTG TCGGATAGCC AATTATCCGA AATACTAGGC
CAGCAGGGAA TCGTAGTTGC CCGACGGACG GTTGCCAAAT ACCGCGAGTC GCTCAACATC
CCCCCGGTCA ATTTACGCAA GACCCTGTAG
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| Protein sequence | MKPALQLKLS QHLALTPQLQ QSIKLLQLST VEMQQEIERY LLENPMLERE DEHGGDNFSA
AQQFDAPQSN EGEREQKVER EERDAREERE QDVPSAPSEV DDDRWASDAG TFTGAGRDED
DDSDSRDIHA ANVSLRDHLG WQLGMTQLSE RDRSLVRFLI EALDDDGYLS APLVELWETL
PPEYEIEIEE LEIALRHIQN FDPIGIGARS LQECLQLQLK VLPVCAERTL ALAIVDKHLE
LLAARDFAKI RRLTGCDDEA LKAAHSLITS LNPRPAAGYA QIEARYITPD VIVKKLKGKW
TAYINPDAYP RLRINRLYAE ILAKQRRGNG NLSTQLQEAR WLIKNVQQRF ETIHRVTQTI
VDRQRQFFEH GEVAMRPLVL REIADILGLH ESTVSRVTSQ KYMATPRGIF ELKYFFGSHV
STDSGGACSA TAIRALIKQL IAAEDGKKPL SDSQLSEILG QQGIVVARRT VAKYRESLNI
PPVNLRKTL
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