| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_4048 |
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| Symbol | |
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| ID | 3567045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4347138 |
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| End bp | 4349357 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637682520 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_287244 |
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| Protein GI | 71909657 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCTA GCCAAGGTGC TGTGCTACCT TGTTGCCCGG ACGACGCCAG GCATGGCATT
GGCATTAATC CGCCGCTGCT TTGCGATCTG CAGCTTTCGA TTTTTGAACA CGCGGGTCGC
GCGATCATTC TGACCAATCC GGACGGTCTG ATTTCCTATT TCAATCGTGC AGCTCAGCAG
ATGCTGGGTT ATACCCCGGA AGAGGTGGTC GGACGTGAGA CGCCGTTGCT CTTCCATTTG
GCTGATGAAA TATCCGCCTG TGCCCGGCTC TATTCATGTG AACCGGATGG TACCCCGCCC
GCCGGCTTTG GGGTGTTTAT CTCCCGATTG AAGCTGAAAA TTCGGGATGA AGCGGATTGG
ACCTACGTTC GCAAGGATGG CTCGCATCTT CCCGTCAGCT TGGCAGTCAG TGTGCTGCGT
GATGCCAAGG GTGGCGTTCA GGGCTATCTC GGCATCGCCT CCGATATTTC GGAGCGGCGA
CGGATGGAGC ATGATTTGCG CATTGCAGCG ATTGCCTTCG AGTCCCAGGC GGCAATCATG
GTGACTGATG TGAATCAGCG CATTCTGCGG GTCAATCAGG CATTTACCAA ACTCACCGGC
TACTCTGCCG AGGAAGCCAT TGGACAGACG CCCGGCATGC TCAAGTCGGG GCGGCAGGAT
GCTGATTTCT ATGCGGCAAT GTGGTGTTCG CTGGGTCAGT GCGGGCATTG GCAGGGCGAA
ATCTGGAATC GCCGCAAGAA CGGCGAGATA TTCCCCGAGT GGCTGACGAT CAGCGGCGTT
CGCGATGGCC GAGGCAAGGT GACTCATTAC GTCAGCACCT TTTCCGATAT CAGCAACCTC
AAGGTCGCCG AATCGGAAAT CCACCATCTG GCGTTCTACG ATCCACTGAC CGCCATGCCG
AATCGCCGTT TGTTGCTCAA CCGGCTCGAT CAGGCGTGTG TTTCCGCCAA GCGCAGCGGG
CAGTTCGGCG CCTTGCTGAT TATCGACATC GATCATTTCA AGACGCTCAA CGATACGCTC
GGACACGATG TTGGCGATCA CCTGCTGGTC GAGGTCGCCA GGCGGCTTAG CGCTTGCATC
CGGGAAGGCG ACACAGCAGC CCGCCAGGGG GGCGACGAGT TTGTCGTGAT GCTTGAGGAA
TTGGGCTCGG AGCAGGAGGG GGCCGCTGTT CAGGCTGAGA TTGTTGCCGA GAAGATTCGT
CTTGAACTCG CCCGGCCCTA TCTGCTGAAT GGCGATACCG AGTATTTCCG TTCGGCCAGC
ATCGGGATCA GTCTGTTCTT CGGCCAGGAA AAAACAATCG ATATCCTGCT CAAGCAGGCC
GATATCGCCT TGTACAAAGC CAAGGATGCG GGTCGCAATG CAATCCGTTT CTTTGACACC
GCCATGCAGA CGACGCTGGA TGAACGGGCT GAGCTGGAAG CAGGGCTCCG CCGGGCGCTG
GTGCGCGATG AATTCGTGCT CTATGTTCAG CCTCAGGTCG ATGCCGTACG TCGCCTGATT
GGCGCCGAAG CCTTGTTACG CTGGCAGCCT CCGGGGCGGG CCATGGTCGC GCCGAACGAT
TTCATTCCGC TGGCCGAGGA AACCGGGTTG ATTGTGCCCA TCGGAATCTG GGTTCTGGAT
CAGGCCTGTG CCGAATTGCG CCGCTGGGCC GATGATCCGC GCAGCGCCAG CCTATTCTTG
TCGGTCAACG TCAGCGCTCG CCAGTTTCGG CAGGCCGATT TCGTCGCGCA GGTGGCAGAT
GCGTTGGCCA GGCATGGCGC CAATCCCCGT TTGCTCAAGC TCGAGCTGAC GGAGAGCCTG
CTGCTCGACA ATGTTGAAGA GGTCATCGAG AAGATGCAGG CCTTGCGTAC CATCGGCGTG
CGCTTCTCGC TGGACGACTT CGGGACAGGC TATGCCTCCC TGTCTTATCT GAAGCGTTTC
CCCTTCGAGC AATTGAAAGT TGATCGTTCC TTCATCCGGG ACATCAACAT CAATCCGGAT
GATGCCGCCA TCGTCAGGGC CATCATCGCC ATGGGCAATA CGCTGCGTCT CAGCGTGGTT
GCCGAAGGCG TCGAGGACGA CTTGCAGCAC GCTTATCTCG TCAAGCACGA GTGCAGCTTG
TTTCAGGGCT ACTTGTTTGG CCGACCGATG TCTTTCGATG ATTTTCGGGC CTCGCTGGGG
AGCGAACCGC CCCCCAGGGC TGACCCTGCC ATTGAGCCAG CCGATAACTG GGTGATCTAG
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| Protein sequence | MKSSQGAVLP CCPDDARHGI GINPPLLCDL QLSIFEHAGR AIILTNPDGL ISYFNRAAQQ
MLGYTPEEVV GRETPLLFHL ADEISACARL YSCEPDGTPP AGFGVFISRL KLKIRDEADW
TYVRKDGSHL PVSLAVSVLR DAKGGVQGYL GIASDISERR RMEHDLRIAA IAFESQAAIM
VTDVNQRILR VNQAFTKLTG YSAEEAIGQT PGMLKSGRQD ADFYAAMWCS LGQCGHWQGE
IWNRRKNGEI FPEWLTISGV RDGRGKVTHY VSTFSDISNL KVAESEIHHL AFYDPLTAMP
NRRLLLNRLD QACVSAKRSG QFGALLIIDI DHFKTLNDTL GHDVGDHLLV EVARRLSACI
REGDTAARQG GDEFVVMLEE LGSEQEGAAV QAEIVAEKIR LELARPYLLN GDTEYFRSAS
IGISLFFGQE KTIDILLKQA DIALYKAKDA GRNAIRFFDT AMQTTLDERA ELEAGLRRAL
VRDEFVLYVQ PQVDAVRRLI GAEALLRWQP PGRAMVAPND FIPLAEETGL IVPIGIWVLD
QACAELRRWA DDPRSASLFL SVNVSARQFR QADFVAQVAD ALARHGANPR LLKLELTESL
LLDNVEEVIE KMQALRTIGV RFSLDDFGTG YASLSYLKRF PFEQLKVDRS FIRDININPD
DAAIVRAIIA MGNTLRLSVV AEGVEDDLQH AYLVKHECSL FQGYLFGRPM SFDDFRASLG
SEPPPRADPA IEPADNWVI
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