| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3999 |
|---|
| Symbol | |
|---|
| ID | 3567210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 4297370 |
|---|
| End bp | 4298209 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637682472 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_287196 |
|---|
| Protein GI | 71909609 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 56 |
|---|
| Plasmid unclonability p-value | 0.824012 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGT TCGCCATTTT TGCCACCCTG TTGATCGTGG TGGTTGCCGC CTTCATTTTG
CCCCCGCTCT GGCTCGGCCT GCGCACGCCA AAACCGCAAA CAGACCGCAA GGAAGCCAAT
GTTGCGATTT TCCGCGACCA GCTGGCCGAA CTTGAACGCG AAAATACGGA AGGAACCTTG
GCTATCGCCG ATTTCGAGCA GGCCAAACGC GAACTCCAAC GCCGCCTGCT TGAAGAAGTC
GAACCGACGA CCGGCGATGC CGTGACCACC ACGTACGGCC CGAGCCGCAA GATGGCGATC
ATCATCCTGC TCCTGCTCCC TATCCTTGGC CTGCTGGCCT ACGGCATACT CGGCAATCCG
AAAGCGCTGG ACCCGATGCA AACCGCTGCC CCGCAGCAGA TGACGCCGGA AAAGATCAAC
GAAATGGTCG CCAGCCTGGC CGCAAAAATG AAGGCCAATC CGGACGACAT GCAAGGCTGG
CTGATGCTCG CCCGCTCCTA CAAATCACTT GGCCGTTACG ACGAAGCGGT ACAAGCCTTC
GCCAAGGCCG AAAAAACCAT TGACGACAAT CCCGACCTGC TCGCTGCTTA CGCCGAAACT
GTCGCCATGG CCAACGGCAA GGGCATCACC GGCAAGGCCC TGCAACTGGT CGAGCGCGCC
TTGAAAATCG ATCCCAAGCA CGCCCACAGT CTGTTCCTGG CCGGCGCTGC CGCCATGGAG
GCTGGCGACA ACAAGAAGGG CATCGCGTAT TGGGAACCAC TGCTGGACCA GGTCGAACCG
GGCTCCGAAA TTGATCAGAT GCTGCGTAGC GGTATCGACA AAATGAAAGC TGGCAAGTAA
|
|---|
| Protein sequence | MTQFAIFATL LIVVVAAFIL PPLWLGLRTP KPQTDRKEAN VAIFRDQLAE LERENTEGTL
AIADFEQAKR ELQRRLLEEV EPTTGDAVTT TYGPSRKMAI IILLLLPILG LLAYGILGNP
KALDPMQTAA PQQMTPEKIN EMVASLAAKM KANPDDMQGW LMLARSYKSL GRYDEAVQAF
AKAEKTIDDN PDLLAAYAET VAMANGKGIT GKALQLVERA LKIDPKHAHS LFLAGAAAME
AGDNKKGIAY WEPLLDQVEP GSEIDQMLRS GIDKMKAGK
|
|---|
| |