| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3990 |
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| Symbol | |
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| ID | 3567279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 4286502 |
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| End bp | 4291499 |
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| Gene Length | 4998 bp |
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| Protein Length | 1665 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637682463 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_287187 |
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| Protein GI | 71909600 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCAAAA TTGTCGAGCT GATAACAACC CGAAGCGATC GAGTTGCGCC CGCCGCCAGT
CTCCGCGACG TGGCATCACG GATGCTGGAC GTGAAGACAT CCTCGGTGAT CGTGGTCGAC
CAGGGCGCTA TTCTGGGCAT CATCACCGAA CGCGACATGC TGCGCGCCAT GCGTCTGCGC
CGCCCCCTCG AACAGACTGC CCGCGAAACG ATGACCAGTC CGGTGCACAG CGTGCCGGCC
AAGACGGATT TCCGGCTCGC CTACCGCGAG GCCGCCAGCC TCGGCATCCG CCACATCGTG
GTCACCGACG AGGCCGGCCT GCCGCTCGGC GTGGTCAGTG AAGCGGACTA TCGCAAACAC
CTCGGCCCCG ACTTCTTCCT CCATCTGAAT ACCGCTGACA CGCTGATGGA AGGCACTTTC
CCCCGCCTGC CTGCCAGCGC GGCCCTTGAC GAGGCACTGG TTGCCATGGA AACCGTGCGC
GGCAGTTGCG TCATCGTGGT CGATGGCCGG CGCCCGCAAG GAATTGTCAC CGAGCACGAC
ATCGTCCGCC TTTTTTTGAG CAGCGAAAGC AACCCGACGC TGGGCTCGGT GATGACCCAC
CCGACCATCA GCGTCCGGGA GGACTGCCCG CTGGCCGATG CCGCCCAACA GATGCTCGAC
CACGGCATTC GTCATTTGAC CGTCGTCGAT AGCGACGGCA ATCTGGCCGG CCTGCTCTCC
GAGCATACCC TGATGAGCCC GCTCAAATTG GGCCTGATCG ACGACGCATT GATCGATCGA
CAGGCGCTCG CCCGAGCCCG GGAAGCCATG CTTGACGAAA CGGCGCGCAA CGAACGCTAT
CAGCGCGCCC TGCTCGATAA CTTTCCCTTT CTGGTCTGGC TGAAAGACAC CGAATCGCGA
TTGCTGACGG CCAACCGGGC AATGGCCAAG GCCGCAGGAA GCGACTCTGT TATCGGTAAA
ACCGATCGCG AACTCTGGCC ACCGGAGCTG GCCAGCGCCT ATCGCGCCGA CGACCTCGCC
GTCATGGCCT CCCGGCAAAA CAAGATCGTC GTTGAACCGA TCATCGTCGA CGGCCAGACG
GTCTGGCACG AGACCTACAA GGCGCCGGTC ATCGCCGACG ATGGCACATT GCTGGGCACG
GTCGGCTTCG CCCGCGACAT TTCAGAACGC AAGCGCGCCG AAGAAGCCAT GCAATTGCGC
AACCAGGCGC TGGCCGGACT GATTGCCGGT GAAGCGCTGC CCCGAGTCCT CGAACTGATC
GCCCTGTCGG TCGAAGCCGA AATTCCGGGC TGGCACTGCT CGATCCTGCT GGCCGACAAG
GATGGGCGAC AACTGCGCCT TGGTGCCGCG CCCAGTCTGC CCCCGGCTTA CGGCCTTGCC
GTCGACGGCA TGCCGATCGC CCCCGGTGTT GCCTCTTCCG GCGCCGCTGC CGCCACCCGC
CAGCGCGTCG TTGTCGACAA CATTAACGAG CATCCGAACT GGGTGAATTA TCGCGACCTG
GCCGATCACG GTTGTTTTTC CGCCTGCTGG TCGGAGCCTG TGATCGGCAC CAACGGCCAG
TTGCTTGGAA CCTTTACTGC CTACTACCCA TCGCCGACCA GCCCGCATGA AGACTACCTG
GGCCTGCTCT TGCAGGCGGC CCAGCTCACT GCCTTGGTCA TCGAGCGCCA GAACAGTTCG
CAGGATCTGG AACGCAGCCT GGCCACCTTC CGCGGTATTT TCGACAGCAT CGGGGAAGCC
CTGTTCATTC AAGGTGAAGA CCGACGCTTT CTGGACGTTA ACACCAGCGC CGAGCAAATG
TTCGGCCTCT CCCGTGCCAG CTTGATCGGC CAGACGCATG AATCCCTGAT TGCGCCAGGT
ATGCTTGATC TGGAGGCCAT CGATCAGGCC ATTTCAACGG CGCTTGCCGG CACGCCACAG
GCATTCGAAA CGCTGGCCAG AAGCAGCACT GAGCGTATTT TCCCGATCGA AGTTCGCCTC
CATACCGCCA GCTACTTCGG TCGCCCGGTG CTGATCGCTT CCGCCGTCGA CATTTCCGAA
CGCAAGAATG CCGAACTGCG CCTTGAAGTC GAGCACGACC TCGCTCAGGC CTTGGCCTCC
GGCATGCAGC GAGACGAAGT ATTAGGGGCG CTACTCAAAG CCATCCAGCG CTTCCCTGAT
CTTGATGCCG GCTGCGTGCA CTGGCGACAA GCCGACGGCA GCTATCGCCT GGTCGCCCAT
CAAGGCGTCT CGCTCGACTT TGCCGAAAAA GTCAGCCATC TCGATGCCGA CAGCCCACTC
GCCCTCCTGG CGCTGAACGG CGGCACCATC TGCAACTGCG AAACCCCCAA CAAACACTGT
GCCGACGCAA GCATCCTCGA TAACCAGGCC ATGCAACGCG AGGGACTGGA TTGCCTGGCT
GCACTGCCCA TCAAACAGGA AAGCCAGCCG GTCGCCTGCC TGACCCTGGG CAGTCGCCAA
GCCTCCGGCG TCTTGCCGTC GACCCTGCTC TCGCTGGAAA AACTGAGCGG CCAATTCAGT
CAGGCATTGC ATCGTCTCGC CGCACAGGAA GAAGCCCGGC GCCTGCAGGA GAACCTGAGC
GGCCTGTTCG ATACGCTGAC CGATTTCATC TTCATTCTCG ACCAGGCAGG CCGCATCCTC
CATTACAACC GCGCCGTCGC TGAAGACCTT GGCTATGGCC AGAACACGCT CAAGGGAAAA
ACGATTGCTG CGGTGCACCC GGAAAACCTG CGCCAGATAG CCGAAGAGGT CACGGTCGAC
ATCATCTCGG GCCGTCGTTA TAGCTGCCCC TTGCCTATCC TGTGCGCCAG CGGCGAGCAA
ATCATGGTCG AGACGCGCGT CGTTAACGGC TATTGGGATG GGCAACCCGC GCTGATCGGC
ATCTCACAGG ATATCAGCGA GCGCCTGATG GCCGAAGAAC GCCAGCAACT GGCGGCCAGC
GTGTTCGACA ACGCCCATGA AGGCATCATG ATCACCGACC CCAAGGGCAA TATCCTTGAG
GTCAATGCCA CATTCACCGA ACTGACCGGC TATTCCCGTG CGGAAGCACT CGGCAACACG
CCGGACATGC TCAAGTCCGG CCATCATGAC CCGGCCTTCT ACGAGGAAAT GTGGCAAAAA
ATCCGCGACG ATGGCTACTG GCGTGGCGAA ATCTGGAACC GCAAGAAATC CGGCGAAATT
TTCGTCGAAC AACTGACCAT TTCAAGCGTT CGCAATCGGG ATGGTGCCCT GTCGAACTTT
GTTGCCATCT TCTCCGACAT CACGCTGCTC AAACAGCACC AGCAGCGTCT GGAGCATCTG
GCCCACTTCG ACGCGCTGAC CCAGTTGCCG AACCGCATGC TGCTCAGTGA CCGGATGCAA
CTGGCCAAGG CACAGGCCGA GCGCAGCGGC AAGACGCTGG CCGTTTGTTA TCTCGACCTG
GACAATTTCA AACCGATCAA CGACCGCTAC GGCCATTCAG TCGGTGACTT CCTGCTGATC
GAAGTCGCCC AGCGCCTGAA AACCTGCGTT CGAGCTGGTG ACACCGTTGC CCGTCTGGGC
GGCGACGAGT TCGTGCTGCT CATCACCAAT CTCGATGATT TGAACGAATG CGACCACGCC
ATGACCCGGG TCATTTCGGC GCTCTCACAA CCCTTCCGGG TCTCGGCACA ATTTGTCACC
GTTTCGGCCA GCATCGGCGT CACCCTCTAC CCCCATGACG GATCGGATTC CGACACGCTG
TTGCGCCACG CCGACCAGTC CATGTACGCG GCCAAACAGG AGGGCCGCAA CCGTTACCAC
CTGTTCGATC CGGAAAATGA TAGACGCGCC CGTCTCCGCC GCGAGGAAAT CGGCCAAATT
CGCGAAGGAC TGGCCAACGG CGAGTTCAAG CTTTACTACC AGCCCAAGGT CAACATGCGC
GAAGGTTCCT TCATCGGTGC CGAAGCGCTG ATCCGCTGGC AACACCCTGA GCGTGGCCTC
CTGCTCCCCG ACAGTTTCCT GCCGGCGCTC GAAGGCAGCG AACTGGCCAT CGACATTGGC
GACTGGGTCA TCCAGGAAGC CCTGAAACAG ATTGACGCCT GGCACCGGAC CCAAGGCATC
GATCTCTCGG TGAGCATCAA TATCGCCGGC ATCCATCTGC AACACCCGGG TTTTTCCCGT
CGCCTCGGCG AATTATTGGC CGCCTACCCG AACGTCACCC CTGGCCAGAT CGAACTTGAA
GTCCTGGAAA CTGCAGCCCT GGAAGATATC CAGACCACCG CCGAACTGTT TGCCGAATGC
CGAAACCTCG GCGTCACTTT TGCGCTTGAC GACTTCGGTA CCGGATACTC CTCGCTAACT
TACTTCCGGC GCCTGCCCGC CGACATGCTG AAGATCGACC AGTCCTTCAT TCGTAACATG
CTGGACGACA CGGACGACCT GGCCATTGTC GAAGGCGTCA TCGGGCTGAC CCACGCCTTC
AAGCGCCAGG TCATTGCCGA AGGCGTCGAA ACGGTCGAGC ACGGCCTGGT TCTGCTACTG
CTCGGCTGCG ATATGGCCCA GGGCTTTGGC ATCGCCCGCC CGATGCCGCC CGAACAGCTG
CCCGACTGGA TCAGGCATTT CCAGCCCGAT GAACTCTGGA GCCTAGCCAC AGCCTTCGAA
TGGTCAAGAG AAGATCTGCC GATGCTGATT GCCGAAGTCG ATCACAAACG CTGGAAAAAA
CAGCTTTACA GCTATCTGGA TAACAGCCGG AACGGCGCAA GCCTACCCGC GATGGACGAG
CACGCATGCC GTTTCGGGCG TTGGTATTAC AGCCCGGAGA GCCAGCGCTA TGCGAGCATC
GAAGCCTTCA AGACCCTCGA GACGGTTCAC ACCCGCCTGC ACGAGATCGG ACGGCAGTTC
ATCCAGCATA TCCAGGCTGG TGAGCTGGAC ACCATCGAGC CACTGAAGCT CGAACTCGAC
AGCGTAAGCA GCCAAATCAG TGACTATATC CGGCAGATAC AGGCAGAAGT GCTGCTTAAA
AATCAGATCG GCAAGTAG
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| Protein sequence | MPKIVELITT RSDRVAPAAS LRDVASRMLD VKTSSVIVVD QGAILGIITE RDMLRAMRLR
RPLEQTARET MTSPVHSVPA KTDFRLAYRE AASLGIRHIV VTDEAGLPLG VVSEADYRKH
LGPDFFLHLN TADTLMEGTF PRLPASAALD EALVAMETVR GSCVIVVDGR RPQGIVTEHD
IVRLFLSSES NPTLGSVMTH PTISVREDCP LADAAQQMLD HGIRHLTVVD SDGNLAGLLS
EHTLMSPLKL GLIDDALIDR QALARAREAM LDETARNERY QRALLDNFPF LVWLKDTESR
LLTANRAMAK AAGSDSVIGK TDRELWPPEL ASAYRADDLA VMASRQNKIV VEPIIVDGQT
VWHETYKAPV IADDGTLLGT VGFARDISER KRAEEAMQLR NQALAGLIAG EALPRVLELI
ALSVEAEIPG WHCSILLADK DGRQLRLGAA PSLPPAYGLA VDGMPIAPGV ASSGAAAATR
QRVVVDNINE HPNWVNYRDL ADHGCFSACW SEPVIGTNGQ LLGTFTAYYP SPTSPHEDYL
GLLLQAAQLT ALVIERQNSS QDLERSLATF RGIFDSIGEA LFIQGEDRRF LDVNTSAEQM
FGLSRASLIG QTHESLIAPG MLDLEAIDQA ISTALAGTPQ AFETLARSST ERIFPIEVRL
HTASYFGRPV LIASAVDISE RKNAELRLEV EHDLAQALAS GMQRDEVLGA LLKAIQRFPD
LDAGCVHWRQ ADGSYRLVAH QGVSLDFAEK VSHLDADSPL ALLALNGGTI CNCETPNKHC
ADASILDNQA MQREGLDCLA ALPIKQESQP VACLTLGSRQ ASGVLPSTLL SLEKLSGQFS
QALHRLAAQE EARRLQENLS GLFDTLTDFI FILDQAGRIL HYNRAVAEDL GYGQNTLKGK
TIAAVHPENL RQIAEEVTVD IISGRRYSCP LPILCASGEQ IMVETRVVNG YWDGQPALIG
ISQDISERLM AEERQQLAAS VFDNAHEGIM ITDPKGNILE VNATFTELTG YSRAEALGNT
PDMLKSGHHD PAFYEEMWQK IRDDGYWRGE IWNRKKSGEI FVEQLTISSV RNRDGALSNF
VAIFSDITLL KQHQQRLEHL AHFDALTQLP NRMLLSDRMQ LAKAQAERSG KTLAVCYLDL
DNFKPINDRY GHSVGDFLLI EVAQRLKTCV RAGDTVARLG GDEFVLLITN LDDLNECDHA
MTRVISALSQ PFRVSAQFVT VSASIGVTLY PHDGSDSDTL LRHADQSMYA AKQEGRNRYH
LFDPENDRRA RLRREEIGQI REGLANGEFK LYYQPKVNMR EGSFIGAEAL IRWQHPERGL
LLPDSFLPAL EGSELAIDIG DWVIQEALKQ IDAWHRTQGI DLSVSINIAG IHLQHPGFSR
RLGELLAAYP NVTPGQIELE VLETAALEDI QTTAELFAEC RNLGVTFALD DFGTGYSSLT
YFRRLPADML KIDQSFIRNM LDDTDDLAIV EGVIGLTHAF KRQVIAEGVE TVEHGLVLLL
LGCDMAQGFG IARPMPPEQL PDWIRHFQPD ELWSLATAFE WSREDLPMLI AEVDHKRWKK
QLYSYLDNSR NGASLPAMDE HACRFGRWYY SPESQRYASI EAFKTLETVH TRLHEIGRQF
IQHIQAGELD TIEPLKLELD SVSSQISDYI RQIQAEVLLK NQIGK
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