| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3954 |
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| Symbol | |
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| ID | 3567492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 4249835 |
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| End bp | 4251838 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637682428 |
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| Product | PAS:GGDEF:hemerythrin HHE cation binding region |
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| Protein accession | YP_287152 |
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| Protein GI | 71909565 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR02481] hemerythrin-like metal-binding domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 0.567366 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTCAG ACATGAACTC ATTGCTCGAC ATTCGGACGC TGATACTGGT CATCACCATT
GTCGTGACCT GTCGCACGTT CATATTAGGG TACGTCTGGA AAATCACCCG TCCCTATCGG
CCCGCAAGCT ATTGGGCTAT CGGGTCGCTG TTGATCAGCG TCGGCGAGTT GTTGGTCGGC
CTGAGGGATC ACATATCTCC TGTTGTTTCA ATCCTGCTCG CGCAGTGCCT GATCATGACT
GGCTGGATGA GCATCACCGG AGGGATTTCC ATCGCGGCGC GGCACAAGCC GGCATGGCGG
ACGGGGGGCG CGTTCATCGC CCTGGCGATC CTCTGCACTT TCTGGTTTCT CGTCATATCC
CCTGATTTTG CGATAAGGAC CTACGCGGCC AGCCTGCCTG TCATCGGCTT CGACCTGTAT
GCCGCTTTCG TGTGCCTGCG CTTCAAGGAA GGGGCACAAC GCGCAACGTT CAGGATACTG
GCGATTACCT TGCTGGCACA GGTGATCTCC AATCTCGTCA AGACCGCTTA CATCGGCATC
AACGAATTGA CCCAGCTTTT TGACGCCCGT TGGCAGGTCG GTCAGTTCTA TGTGGTGTCG
GTAATCACGG CATCGGTATC GACCGCGTTA TTCGTGTTGC TCGCCGTACA ACGCCTTCAG
GAACAATTGA ATGCCGAACT CCTGGCGCGG CGAGAAATCG ACCACTCAGT ACAGCTTGCC
GCCATGGTCT ATCAGGCAAG CAGTGAAGGC ATGCTCGTCA CGGAACCCGA TGGCAGAATC
ATCTCCGTCA ATCCTGCTTT CACCGCCATC TCTGGTTATA CGCAAGATGA GCTGGTCGGA
AAAACTCCCC GGATATTCAA GTCGGGAAAA CAAGAGCCCG AGTTTTATGC GGCGATGTGG
CGGGAAATCA TTGCGACGGG GCACTGGAAA GGCGAACTGT GGAATCGACA CAAGGACGGA
AACCTGTCTG CCGAGGCGCT CAGTATCAAT ACCATACGCA ACCCGGACGG ATCGCCACAA
CGGTTTGTAG CGCTCTATCA CGATGTCACG TCACAAAAAC AATCCGCAGA GGTCATTTAC
CATCAGGCCA ACCACGATCA ATTAACCAAT TTAGCCAACA GAAACCACTT CTTTCAGCAG
CTTTCGAAAG AACTATCCCG CGCCCGCCGC ACCGGAAAGC GCGTTGGGCT GCTGTTCACC
GACCTGAATC GATTCAAGCC AATTAACGAC CAATTTGGTC ACGAAGCAGG CGACACGGTT
CTAAAAACCG TCTCGCAACG GTGGTTGGCT TGTGTACGCG ACAACGACCT TCTGGCAAGG
ATAGGCGGCG ACGAATTTGC GCTGATTATT TGTGATCTAA ACGATGTATC GCAAACCAAG
ATCATCGCGA GAAAGCTCAT TGCGACGCTG GAAGCACCGA TCGCAATTGG TAACGATCAA
AGCTGCACGG TCGGCACAAG CATAGGGATC GCCATCTATC CTGACAACGC CATGGAAATG
GATTCCCTGA TTTCTGTCGC CGACGCGGCC ATGTATGCCA GCAAGTCGTC TGGCAACAAC
ATCATTCGAC TCGCCGACGT TGTGGCGTCA GAAAAGAAAA ATCAATCGGA CTGGATTGTT
TTTGAGTCGG GCCATCTTGT TGGCGTCAAA AAAATCGACG AGCAGCATCA GGAACTGGTC
CGCATGGTAA ACAAGATCAA TCGAGCCATT CATTCGCGAT GTGAAGATGC CTCACTGAAA
CTGATGTTCA ATGAACTCGT TGCATTCACC GAACACCATT TCTCGACCGA ATTACGGTTC
ATGATCGATT TTCACTATCC GGAAACCGAC GTTCATGACC AGCAGCACCA GGCACTTGTG
GCGCAACTCA GTAATCTGAT TACCCGGTTC GAGCAAGGTG ATGAGTTGCA ATCGCTCCAG
ATGATCAAAG ACTGGCTACT GAGGCACATC GAACATGCCG ACAAGCCGCT AGGGGCATAT
CTAGCCTCTA AAGGTGCCAA TTAG
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| Protein sequence | MMSDMNSLLD IRTLILVITI VVTCRTFILG YVWKITRPYR PASYWAIGSL LISVGELLVG
LRDHISPVVS ILLAQCLIMT GWMSITGGIS IAARHKPAWR TGGAFIALAI LCTFWFLVIS
PDFAIRTYAA SLPVIGFDLY AAFVCLRFKE GAQRATFRIL AITLLAQVIS NLVKTAYIGI
NELTQLFDAR WQVGQFYVVS VITASVSTAL FVLLAVQRLQ EQLNAELLAR REIDHSVQLA
AMVYQASSEG MLVTEPDGRI ISVNPAFTAI SGYTQDELVG KTPRIFKSGK QEPEFYAAMW
REIIATGHWK GELWNRHKDG NLSAEALSIN TIRNPDGSPQ RFVALYHDVT SQKQSAEVIY
HQANHDQLTN LANRNHFFQQ LSKELSRARR TGKRVGLLFT DLNRFKPIND QFGHEAGDTV
LKTVSQRWLA CVRDNDLLAR IGGDEFALII CDLNDVSQTK IIARKLIATL EAPIAIGNDQ
SCTVGTSIGI AIYPDNAMEM DSLISVADAA MYASKSSGNN IIRLADVVAS EKKNQSDWIV
FESGHLVGVK KIDEQHQELV RMVNKINRAI HSRCEDASLK LMFNELVAFT EHHFSTELRF
MIDFHYPETD VHDQQHQALV AQLSNLITRF EQGDELQSLQ MIKDWLLRHI EHADKPLGAY
LASKGAN
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