| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3942 |
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| Symbol | |
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| ID | 3567480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 4236697 |
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| End bp | 4238043 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637682416 |
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| Product | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase |
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| Protein accession | YP_287140 |
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| Protein GI | 71909553 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.000149296 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACATTC ATATTCTCGG TATCTGCGGC ACCTTCATGG GTGGCGTTGC GCAACTGGCG
GTTGATTCCG GCCACAAAGT CACCGGCTGC GATGCCAATG TATATCCGCC GATGAGTGAC
CAGTTACGCG GCGCCGGCAT CGAACTGATT GAAGGCTTCG ACACGGCCCA ACTCGCCCTC
GCCCCGGACA TGTTCGTGAT CGGCAACGCC ATTTCACGCG GCAACCCGCT GCTCGAAGCC
ATTCTCGACA AGGGTCTGCC CTATGTTTCC GGCCCGCAAT GGCTGGCCGA GAATGTGCTG
CAGGGCCGCT GGGTGCTTGG CGTTGCCGGC ACCCACGGCA AGACGACCAC CGCCTCGATG
CTGGCCTGGA TACTTGAAGA TGCCAACATG GCCCCCGGCT TCCTGATCGG CGGCGTACCG
CTGAACTTCG GGGTATCTGC CCGCCTGGGT GACACGCCAT TTTTCGTCAT CGAAGCCGAC
GAGTACGACA CGGCCTTCTG CGACAAGCGT TCGAAATTCG TTCACTACCA TCCGCGAACC
GTTGTCCTGA ACAATCTTGA GTTTGATCAC GCCGATATTT TCAGCGATCT GGCGGCGATC
GAGACGCAAT TCCATCACCT TGTGCGCACC TTGCCACAAA GCGGGCTGAT TGTTTCCAAT
GCCGCCGAAG CCAGCCTCGA CCGCGTGCTG GCGCGTGGCT GCTGGACACC GGTCGAGCGC
TTCAACGATC CAGCCGGTTA TCGCGTGACC GGCGACGATG CGCGGGGTGA ACTCGTGCTA
CATGGCCCGG AGGGTGTGAT TGGCCGCACA CGCTGGAATC TCTCCGGCGA ACACAATCGC
GCCAATGCCT GTGCCGCCTT GCTCGCTGCC CGCCATGTCG GCGTCTCGCT GGCCCATGGC
CTCGATGCAC TGTCCCGCTT CGTCAATGTC AAACGCCGCA TGGAAGTCCG TGGCGAAGTA
CGTGGCGTCA CGGTGTATGA CGATTTCGCC CACCACCCAA CGGCCATCGC CACCACCGTC
GCCGGCCTGC GCCGCAAGGT CGGCAATGCC CGCATTCTGG CCGTGCTGGA GCCACGCTCG
AACACGATGA AGCTGGGCAC GATGAAGTCG CAGTTGCCGG ATAGCCTGCG CGAAGTTGAT
GCAGCTTTCT GCTACGCCGG CAACCTCGGC TGGGATGCCC GCGAAGCACT GGCACCGATG
GGCGAACGCG CCATCGTCGA GGAAAATCTG GACCGACTGG TTGACCAGAT CGTCATTGCC
GCACAACCGG GCGATCATAT CCTGGTCATG AGCAACGGCG GCTTTGGCGG CATCCACGGC
AAGATTCTGG CCGGGCTCAC CGAGTAA
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| Protein sequence | MHIHILGICG TFMGGVAQLA VDSGHKVTGC DANVYPPMSD QLRGAGIELI EGFDTAQLAL
APDMFVIGNA ISRGNPLLEA ILDKGLPYVS GPQWLAENVL QGRWVLGVAG THGKTTTASM
LAWILEDANM APGFLIGGVP LNFGVSARLG DTPFFVIEAD EYDTAFCDKR SKFVHYHPRT
VVLNNLEFDH ADIFSDLAAI ETQFHHLVRT LPQSGLIVSN AAEASLDRVL ARGCWTPVER
FNDPAGYRVT GDDARGELVL HGPEGVIGRT RWNLSGEHNR ANACAALLAA RHVGVSLAHG
LDALSRFVNV KRRMEVRGEV RGVTVYDDFA HHPTAIATTV AGLRRKVGNA RILAVLEPRS
NTMKLGTMKS QLPDSLREVD AAFCYAGNLG WDAREALAPM GERAIVEENL DRLVDQIVIA
AQPGDHILVM SNGGFGGIHG KILAGLTE
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