| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3883 |
|---|
| Symbol | |
|---|
| ID | 3567728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 4176677 |
|---|
| End bp | 4177720 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637682357 |
|---|
| Product | pilus retraction protein PilT |
|---|
| Protein accession | YP_287081 |
|---|
| Protein GI | 71909494 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCA CCGAACTGTT GGCCTTCAGT GTCAAGAACA AGGCTTCAGA CCTTCATTTG
TCGTCCGGGT TGCCGCCCAT GATTCGCGTG CACGGCGACG TCCGGCGCAT CAACCTGCCA
GCCATGGAGC ACAAGGATGT GCACGGTATG GTGTACGACA TCATGAACGA TGGCCAGCGC
AAGATTTATG AAGAAACGCT GGAATGTGAT TTCTCTTTCG AAATTCCCAA TCTGGCGCGT
TTCCGGGTCA ATGCCTTCAA CCAGCAGCGC GGTGCGGCGG CGGTGTTCCG GACCATTCCG
TCCAAGGTGC TGACCCTTGA AGAGTTGAAT TGCCCGAAAA TTTTCAAGGA AATTTCCGAG
TATCCGCGCG GTATCGTGCT GGTCACCGGG CCGACCGGTT CCGGCAAATC GACGACACTG
GCGGCGATGG TCAATCACAT CAACGAAAAC GAATACGGCC ACATCCTGAC GGTCGAGGAT
CCAATCGAAT TCGTGCATGA ATCGAAGAAG TGCCTGATCA ACCAGCGCGA AGTCGGGCCG
CATACCCTGT CGTTCTCCAA TGCCCTGCGT TCGGCGCTGC GCGAGGATCC GGACGTCATT
CTGGTCGGCG AAATGCGTGA CCTGGAAACC ATCCGCCTGG CCCTGACCGC AGCCGAAACC
GGTCACTTGG TGTTCGGCAC GCTGCATACC TCATCTGCTG CCAAGACAGT CGACCGCGTG
GTTGACGTCT TCCCCGCGGC AGAAAAGGAA ATGGTTCGTT CGATGCTGTC CGAATCGTTA
CGCGCCGTCA TTTCGCAGAC GCTGCTCAAG ACCAAGGATG GGGGCGGCCG GGTTGCGGCG
CACGAAATCA TGATTGGTAC GCCGGCTATC CGCAATCTGA TTCGTGAGAA CAAGATTGCC
CAGATGTATT CAGCCATTCA GACCGGCCAG AATTTCGGCA TGCAGACACT GGATCAGAAT
CTGATCGACA TGGTTCGACG CAATGTGGTG TCGAGCAATG AGGCACGCTA CAAGGCGGCC
AACAAGGATG CATTCCCGGC CTGA
|
|---|
| Protein sequence | MDITELLAFS VKNKASDLHL SSGLPPMIRV HGDVRRINLP AMEHKDVHGM VYDIMNDGQR
KIYEETLECD FSFEIPNLAR FRVNAFNQQR GAAAVFRTIP SKVLTLEELN CPKIFKEISE
YPRGIVLVTG PTGSGKSTTL AAMVNHINEN EYGHILTVED PIEFVHESKK CLINQREVGP
HTLSFSNALR SALREDPDVI LVGEMRDLET IRLALTAAET GHLVFGTLHT SSAAKTVDRV
VDVFPAAEKE MVRSMLSESL RAVISQTLLK TKDGGGRVAA HEIMIGTPAI RNLIRENKIA
QMYSAIQTGQ NFGMQTLDQN LIDMVRRNVV SSNEARYKAA NKDAFPA
|
|---|
| |