| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3879 |
|---|
| Symbol | |
|---|
| ID | 3567763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 4172324 |
|---|
| End bp | 4174315 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637682353 |
|---|
| Product | ATP-dependent DNA helicase Rep |
|---|
| Protein accession | YP_287077 |
|---|
| Protein GI | 71909490 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 66 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGTC TCAATCCCCA GCAACGCGAA GCGATCCACT ATCTTGACGG CCCCTTGCTG
GTGCTGGCGG GGGCTGGTTC GGGCAAGACA CGGGTAATCA CGCAGAAAAT TGCCTATCTG
GTCCAGGATT GCGGCTTTCA GCCACGCAAC ATCGCCGCCA TCACTTTCAC CAACAAGGCG
GCCAAGGAAA TGCAGGAGCG GATCGGCAAG ATTCTGTCGA AGCCGCAAGC CGACGATCTG
CAGATTTCAA CTTTCCACTC GCTGGGCGTG CGCATCCTGC GTGAAGAAGC CAAGGCACTC
GGTTACAAGC CACGTTTCTC GATCTTCGAT TCAGCCGATT GTGCTGGCAT CATCAGCGAA
GCGGCAAAGA CCGTCGACAA GGGAACGCTG CGCCACCTGC AGTCGATTAT TTCTAACTGG
AAGAATGGTC TGATCACGCC CGAGGCTGCT CTAAAGCTAG CCAAGGATGA TCACGAGACG
CTGGCCGCCC ACGCCTACCT GAGCTATGAA GCCACCCTGA AGGCTTATCA GGCAGTCGAT
TTCGACGACC TGATCGGCTT GCCGGTCGTC CTCTTCCAGC AGCACCCGGA CATTGCCGAA
AAATGGCAGA ACCGCCTGCG CTACCTGCTG GTCGATGAAT ACCAGGACAC CAACGCCTGC
CAGTACCAAC TGCTCAAGCT GCTGACCGGC GTCCGCGCCC AGTTTACGGC GGTGGGTGAC
GATGATCAGG CGATCTACGG CTGGCGGGGC GCTGACATCG ACAACCTGAA AAAGCTGCCG
GCTGAATTCC CTGCGCTGAA AGTCATCAAG CTGGAGCAGA ACTACCGTTC GACGGTGCGT
ATCCTGAAGG CGGCCAACAA CGTTATTGCC AATAACGAAA AGCTGTTCGA CAAGAAGCTG
TGGTCGGATC TTGGCCACGG TGAGCAGATT GTCGTGACTG CCTGTCGCGA CAACGATGCT
GAAGCAGAAG GTGTGGTCAT GAAGCTGCAA GCGCATCGCT TCCAGCATCG TGGCAAGTTC
AAGGACTATG CGATTCTTTA CCGCTCGAAT CACCAGGCCC GAGGTTTCGA GGAGTATCTG
CGGGATCACC GCATTCCCTA CCTGCTCTCC GGTGGCAAAT CGTTTTTCGA CAAGCCGGAA
ATCAAGGACA TCACCGCCTA TCTACGCCTG CTGACCAACG AGGACGATGA TCCGGCCTTT
ATTCGGGCGG CGACGACCCC CAAACGCGGT ATCGGCGCGG CGACGCTGCA AGTGCTTGGC
ACCTATGCCG GCGAGCGCCA TATTTCGCTG TTTCAGGCGG CGTTTGAAGA AGGCTTCGCG
CAGCGCGTCC AGGCGCGCCA GCTGGAGCCA TTGCTCGAAT TCTGTAACTT CATCAACCGC
CTGCAGCACC GGGCTGGAAC CGAACCGGCA CAGCAGGTAC TGCCCGATCT GCTCAAGGCG
ATCGATTACG AAACCTTCCT CTACGATCAC GAAGAGGAGC GGACGGCCCA GACGCGTTGG
GGCAACGTCT GCGAGTTTGC CAACTGGCTG AACAAGAAGG GCGAGGAGCA AGGCAAGACG
CTGATCGACC TGACCCAGAG CATCGCCCTG ATCAACATGC TGGACAAGCA GAAGGACGAA
GACTACGACG CAGTTCAGCT GTCGACCTTG CACGCGGCCA AGGGGCTGGA GTACAAGCAC
GTCTTCCTGG TCGGGATTGA AGAGGGCATC CTGCCGCATC GGGAATCCGT CGATCCGGCC
AAGATCGAGG AAGAGCGCCG CCTGATGTAC GTCGGCATCA CTCGTGCCCA GCACACCTTG
AATATTTCCT ACTGCGAAAG ACGCAAGCAG ATGCGGGAGT TCATCCCCTG CGAACCGTCA
CGGTTCATCG ATGAAATGGG CAAGGAGGAC GTCCGCTTCT CCGGCGGCAA GGATGCCGCG
CTGCCCGACA AGGAAACCGG CAACGCCCGT CTTGATGCCA TGAAGGCCAT GCTGGCCGGA
AACAAGCGCT AA
|
|---|
| Protein sequence | MSGLNPQQRE AIHYLDGPLL VLAGAGSGKT RVITQKIAYL VQDCGFQPRN IAAITFTNKA
AKEMQERIGK ILSKPQADDL QISTFHSLGV RILREEAKAL GYKPRFSIFD SADCAGIISE
AAKTVDKGTL RHLQSIISNW KNGLITPEAA LKLAKDDHET LAAHAYLSYE ATLKAYQAVD
FDDLIGLPVV LFQQHPDIAE KWQNRLRYLL VDEYQDTNAC QYQLLKLLTG VRAQFTAVGD
DDQAIYGWRG ADIDNLKKLP AEFPALKVIK LEQNYRSTVR ILKAANNVIA NNEKLFDKKL
WSDLGHGEQI VVTACRDNDA EAEGVVMKLQ AHRFQHRGKF KDYAILYRSN HQARGFEEYL
RDHRIPYLLS GGKSFFDKPE IKDITAYLRL LTNEDDDPAF IRAATTPKRG IGAATLQVLG
TYAGERHISL FQAAFEEGFA QRVQARQLEP LLEFCNFINR LQHRAGTEPA QQVLPDLLKA
IDYETFLYDH EEERTAQTRW GNVCEFANWL NKKGEEQGKT LIDLTQSIAL INMLDKQKDE
DYDAVQLSTL HAAKGLEYKH VFLVGIEEGI LPHRESVDPA KIEEERRLMY VGITRAQHTL
NISYCERRKQ MREFIPCEPS RFIDEMGKED VRFSGGKDAA LPDKETGNAR LDAMKAMLAG
NKR
|
|---|
| |