| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3828 |
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| Symbol | |
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| ID | 3568187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4116293 |
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| End bp | 4119481 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637682302 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_287026 |
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| Protein GI | 71909439 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.130415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTT CAAAATTCTT CATCGACCGG CCAATCTTCG CCGGCGTGCT GTCCATCCTG
CTGCTGCTGG CCGGCGTGCT GGCGCTGTTC CAGCTGCCGA TCTCGGAGTA TCCGGAGGTC
GTGCCGCCCT CGGTGGTGGT GCGTGCCCAG TACCCCGGCG CCAACCCCAA GGTGATCGCC
GAAACGGTGG CCTCGCCACT CGAGGAGTCG ATCAACGGCG TCGAGAACAT GCTCTACATG
CAGTCGCAGG CCAACAGCGA CGGCAACCTG ACGGTGACGG TCAATTTCAA GCTCGGCGTC
GATCCCGACA AGGCGCAGCA ACTGGTCCAG AACCGCGTCT CGCAGGCCCT GCCGCGCCTG
CCCGAGGACG TCCAGCGCCT CGGCGTGACG ACGATCAAGA GCTCGCCGAC GCTGACCATG
GTGGTGCACC TGATCTCGCC CGACGACCGC TACGACATGA CCTACCTGCG CAACTACGCG
GTGCTCAACG TCAAGGATCG GCTGGCCCGC ATCCAGGGCG TCGGCGAAGT CGGCCTGTTC
GGTTCCGGCA ACTACGCCAT GCGCGTCTGG CTCGACCCGC AGAAAGTGGC CCAGCGCGGC
CTGACCGCCA GTGAAGTGGT GCGCGCCATC CGTGAGCAGA ACGTGCAGGT CGCGGCCGGC
GTCATTGGCG CCTCGCCGAG CGCCGCCGAC GTGCCGCTGC AGCTCAACGT CAATGCCCAG
GGCCGCCTGC AAAGCGAAGG GGAATTCGGC GAAATCGTGC TCAAGACCTC ACCGGACGGT
GCCGTCACGC GCCTGGCCGA CGTCGCCCGC ATCGAACTGG CGGCATCCGA ATACGGCCTC
CGTTCCCTGC TCGACAACAA GCCGGCAGTG GCCATTCCCA TTTTCCAGGC GCCAGGCGCC
AACGCGCTCG ATGTCTCGGC CAAGGTGCGC GAAGCGATGG CCGAGCTGTC CAAGGACTTC
CCGGCTTCGG TCGAGTACCG CATCGTCTAT GACCCGACGC AGTTCGTGCG GGCCAGCATC
AAGGCCGTCG TCCATACCCT GCTCGAAGCC ATCGCCCTGG TCGTGCTGGT CGTCATCGTC
TTCCTGCAGA CCTGGCGCGC CTCGATCATC CCGCTGCTCG CCGTGCCGGT TTCCATCGTC
GGTACCTTCT CGTTGCTGCT CGGCTTCGGC TATTCGATCA ACGCCCTGTC GCTGTTCGGC
ATGGTGCTGG CCATCGGCAT CGTGGTCGAT GACGCCATCG TCGTCGTCGA AAACGTCGAG
CGCAACATCG AGGCCGGGCT GACGCCGCGC GAAGCCACCT ACCGGGCGAT GCGCGAAGTC
AGCGGGCCGA TCATCGCCAT CGCCCTGACG CTGGTCGCCG TCTTCGTGCC GCTCGCCTTC
ATGACCGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCGA TGACCATCGC CATCTCGACG
GTGATCTCGG CCTTCAATTC GCTAACCCTG TCGCCGGCGC TGGCCGCCAT GCTGCTCAAG
GGCCACGGCG AAGCGCCGGA CTGGCTGACC CGGCAGATGA ACCGCTACTT CGGCCGTTTC
TTCGCCGCCT TCAACCGCTT CTTCGGCCGC GCTTCAGAAA ACTACGGCCG CGGCGTCACC
GGCGTGATCG GCCGCAAGGC TTCGGCGATG GGCGTCTATG CCGTGCTGCT CGGGCTGACC
GTCGGCATTT CCTACCTGGT GCCCGGCGGC TTCGTGCCGG CCCAGGACAA GCAATACCTG
ATCGGCTTCA CGCAGCTGCC GAACGGCGCC TCGCTCGACC GCACCGAGGC GGTGATCCGC
AAGATGGGCG AAATCGCCCT GGCCCAGCCC GGCGTCGAAA GCGCCGTCGC CTTCCCCGGC
CTGTCGATCA ACGGCTTCAC CAACAGCTCG AGCGCCGGCA TCGTCTTCGC GACGCTCAAG
CCCTTCGACG AACGGCGCAG CCCGGAACTC TCGGCCGGCG CCATCGCCGG CGCGCTGAAC
CAGAAATACG CGGCCATCCA GGAAGCCTTC ATCGCCGTCT TCCCGCCGCC GCCGGTGATG
GGTCTGGGCA CCGTGGGCGG TTTCAAGATG CAGATCGAGG ATAGAGGCGC GGTCGGCTAT
GCCGAGCTCA ACGCCGCGGC CCAGGCCTTC ATGGCCGCTG CCGCCAAGAC CCCGGAGCTG
GGGCCGATGT TTTCCAGCTA TCAGATCAAT GTGCCCCAGC TCGACGTTGA TCTCGACCGC
GTCAAGGCTA AGCAGCAGGG GGTTTCGGTG ACCGACGTCT TCGACACCAT GCAGATCTAC
CTCGGCTCGC TCTACGTGAA CGACTTCAAC CGCTTCGGCC GTACCTACCA GGTCCGTGCC
CAGGCCGATG CGCCGTTCCG TGCCCACCCG GAAGACATCC TGCAACTGAA GACCCGCAAC
AGCCAGGGCG AGATGGTGCC GCTTTCCTCG CTGGTCAAGG TGCGCTCCAC CTTCGGGCCG
GAAATGGTTG TCCGCTACAA CGGCTACACC GCGGCCGACA TCAACGGCGG TCCGGCCCCC
GGCTACTCCT CGGCGCAGGC CGAGGCCGCG GCCGAACGCA TCGCGGCGGA AACCCTGCCG
CGCGGCGTGC GCTTCGAATG GACCGACCTG ACCTACCAGA AGATTCTGGC TGGCAACGCC
GGCATCTGGG TCTTCCCGAT CAGCCTGCTG CTCGTCTTCC TGGTGCTGGC CGCGCAGTAC
GAAAGCCTGA CCCTGCCGCT GGCCGTGATC ATGATCGTGC CGATGAGCAT CCTGGCGGCG
CTGACCGGCG TCTGGCTGAC CGGTGGCGAC AACAACATCT TCACCCAGAT CGGGCTGATG
GTGCTGGTCG GGCTGGCCTG CAAGAACGCT ATCCTGATCG TCGAGTTCGC CCGCGAACTG
GAACTGCAGG GCGCGACGCC GCTGCAGGCC GCCATCGACG CCAGCCGGCT GCGGCTGCGC
CCGATCCTGA TGACCTCGAT CGCCTTCATC ATGGGCGTCA TCCCGCTCGT CACCTCGACC
GGCGCCGGTT CCGAAATGCG CCACGCCATG GGCATCGCCG TCTTCTTCGG CATGCTCGGC
GTGACCACTT TCGGTCTGTT CCTGACCCCG GTTTTCTACG TGCTGCTACG GACGCTGGAC
AAGGGCCACA AGTTGCACAC CGCCGCCCCG CACGAGGCGC CGATTGCCCC AGCCCATAGC
GCGGCCTGA
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| Protein sequence | MNISKFFIDR PIFAGVLSIL LLLAGVLALF QLPISEYPEV VPPSVVVRAQ YPGANPKVIA
ETVASPLEES INGVENMLYM QSQANSDGNL TVTVNFKLGV DPDKAQQLVQ NRVSQALPRL
PEDVQRLGVT TIKSSPTLTM VVHLISPDDR YDMTYLRNYA VLNVKDRLAR IQGVGEVGLF
GSGNYAMRVW LDPQKVAQRG LTASEVVRAI REQNVQVAAG VIGASPSAAD VPLQLNVNAQ
GRLQSEGEFG EIVLKTSPDG AVTRLADVAR IELAASEYGL RSLLDNKPAV AIPIFQAPGA
NALDVSAKVR EAMAELSKDF PASVEYRIVY DPTQFVRASI KAVVHTLLEA IALVVLVVIV
FLQTWRASII PLLAVPVSIV GTFSLLLGFG YSINALSLFG MVLAIGIVVD DAIVVVENVE
RNIEAGLTPR EATYRAMREV SGPIIAIALT LVAVFVPLAF MTGLTGQFYK QFAMTIAIST
VISAFNSLTL SPALAAMLLK GHGEAPDWLT RQMNRYFGRF FAAFNRFFGR ASENYGRGVT
GVIGRKASAM GVYAVLLGLT VGISYLVPGG FVPAQDKQYL IGFTQLPNGA SLDRTEAVIR
KMGEIALAQP GVESAVAFPG LSINGFTNSS SAGIVFATLK PFDERRSPEL SAGAIAGALN
QKYAAIQEAF IAVFPPPPVM GLGTVGGFKM QIEDRGAVGY AELNAAAQAF MAAAAKTPEL
GPMFSSYQIN VPQLDVDLDR VKAKQQGVSV TDVFDTMQIY LGSLYVNDFN RFGRTYQVRA
QADAPFRAHP EDILQLKTRN SQGEMVPLSS LVKVRSTFGP EMVVRYNGYT AADINGGPAP
GYSSAQAEAA AERIAAETLP RGVRFEWTDL TYQKILAGNA GIWVFPISLL LVFLVLAAQY
ESLTLPLAVI MIVPMSILAA LTGVWLTGGD NNIFTQIGLM VLVGLACKNA ILIVEFAREL
ELQGATPLQA AIDASRLRLR PILMTSIAFI MGVIPLVTST GAGSEMRHAM GIAVFFGMLG
VTTFGLFLTP VFYVLLRTLD KGHKLHTAAP HEAPIAPAHS AA
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