| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3827 |
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| Symbol | |
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| ID | 3568186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4114760 |
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| End bp | 4116274 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637682301 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_287025 |
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| Protein GI | 71909438 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 0.0692116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTACT TGCTCCCTTA CTATCCCCGC GCCAACACTG CGGCCGAATC TCCCAAGCGC
CCGGCCCGCC GGGCGGGCAC TGCCAGATTC ATCCCATTGC TGGCGGCATT GCTGACGCTG
GCCGGCTGCT CGCTGGCCCC GAGCTACCAG CCACCAGTGG TCGATACCCC GGCCGCGTTC
AAGGAAGCGC CGGCCAATAG CCAGTGGAAG ACGGCCGAGC CGGCCGAGAA CATCCCGCGC
GGCGAATGGT GGAAGGCCTT CGCCGACCCG ACGCTGGACG ACCTCGAAGC CCGGGCGGCC
GCAGCCAACC AGGACCTCAA GGCCGGCGCC GCCCGTCTGG CCCAGGCCCG GGCCCTGCAA
CAGAACGCCC GCTCGGCGCT CTTCCCGCAG ATCGGCATCG GCGCCGGGCC GACCCGCCAG
CGCCCCTCAC CGGCCTCGCA AGGGCTGGCG GCCGACGCCG ACACCAGCCT CTCGACCCTT
TGGCGGGCGC AAGGTACGGT CGCCTACGAG GCTGACCTGT TCGGCCGGGT GAGCAGCAGC
GTCGATGCGG CCAAAGCCAC CACCGAGCAG CGCGAGGCCC TGTTCCACTC GCTGCAGCTG
GCCATCCAGG CCGACGTCGC GCAGGCCTAT TTCTCGCTGC GTGAACTCGA TGCCATGTCT
GCCCTTTACG CCGAGACGGT GACCCTGCGT GAGCAGAGCA CCCAGCTGTT CCAGCGCCGC
TTCGACGAAG GGGACATCAG CGAACTTGAG CTGGCCCGCT CCCGCACCGA ACTTGCCTCG
GCCCGTTCCG AGGCGCTGGG CATCGCTCGC CAGCGCGCCG TCGCCGAGCA CAGCCTGGCC
ATCCTGCTCG GCCAGGCACC GGCTGCATTC GCGCTGCCGG CGAAGCCGCT CAACCGGGTC
AGCCTGCAGG TGCCGGCCGG TCTGCCCTCG GCCCTGCTCG AACGGCGTCC CGACATTGCC
GCCGCCGAAC GGGCGATGGC CGCCGCCAAT GCCCGCATCG GCACGGCCCG CGCCGCCTTT
TTTCCGCGCC TCAGCCTGAC CGGGGCGCTC GGTTACGAGT CGGCCGAACT GGGCGACCTG
TTCAAGTGGA GCAGCCGCGC CTTCGTCATG GGGCCGCTGG TCGGCACACT GCTGTCGCTG
CCTGTGTTCG ATGGCGGTGC CCGCCAGGCC GGCGTCGACC AGGCCCATGC CGCCTACGCC
GAAGAGGCCG CCAACTACCA GCAGACGGTA CTCAAGGCCT TCAAGGAAGT GGAGGACAAC
CTGGCCCACC TGCGCCTGCT CGTCGACCAG ACTCAGGCGC AGGACGAGGC GGTCAGTTCG
GCCCGGCGTT CCGCCCGGCT GTCGCAGATC CAGTACCGCG AAGGCTCGGT CAGCCACCTC
AACGTGATTG ATGCCGACCG CAGCGTGCTG CAGCAGCAAC GCGTTTCCGT GCAGCTTGAG
GCCGAACAGG CGCGGGCGAC GGTCAATCTG ATCCGGGCAA TCGGCGGGGG GTGGAGCAGT
GCATCGACGA ACTAA
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| Protein sequence | MDYLLPYYPR ANTAAESPKR PARRAGTARF IPLLAALLTL AGCSLAPSYQ PPVVDTPAAF
KEAPANSQWK TAEPAENIPR GEWWKAFADP TLDDLEARAA AANQDLKAGA ARLAQARALQ
QNARSALFPQ IGIGAGPTRQ RPSPASQGLA ADADTSLSTL WRAQGTVAYE ADLFGRVSSS
VDAAKATTEQ REALFHSLQL AIQADVAQAY FSLRELDAMS ALYAETVTLR EQSTQLFQRR
FDEGDISELE LARSRTELAS ARSEALGIAR QRAVAEHSLA ILLGQAPAAF ALPAKPLNRV
SLQVPAGLPS ALLERRPDIA AAERAMAAAN ARIGTARAAF FPRLSLTGAL GYESAELGDL
FKWSSRAFVM GPLVGTLLSL PVFDGGARQA GVDQAHAAYA EEAANYQQTV LKAFKEVEDN
LAHLRLLVDQ TQAQDEAVSS ARRSARLSQI QYREGSVSHL NVIDADRSVL QQQRVSVQLE
AEQARATVNL IRAIGGGWSS ASTN
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