Gene Daro_3770 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3770 
Symbol 
ID3567503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp4055502 
End bp4056488 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content61% 
IMG OID637682245 
ProductPAS:GGDEF 
Protein accessionYP_286969 
Protein GI71909382 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones63 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0223226 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAATGA TGTCTAGTCG AAAACCGGCT AATCAGTCTC AAGAGTTGAG TTTTGCCGTA 
AACCTGATGG AGCATCTGGT GGTGCCGACC TTTGTGGTGG ACGCCGCTTG TCGGGTGCTG
ATCTGGAATC GGGCCTGCGA ACGACTGACC GGCGTGATGG CCTCAGAGGT GGTGGGTACC
GTCGATCACT GGCAGGCTTT CTACGACGAG CCCCGCCTGT GCCTGGCCGA TGCGCTGGCC
AAGGGAATGA CGGCCGATCT GGACCGCCTC TATTCCTACC ATACCGAACC CTCCGAGCAT
GGTCATGGCA TGAAGGCCGA GAACTGGTGC GTGATGCCGA AGATGGGTGA GCGCCTGTAT
CTGGCGATCG ACGCCGGACC GATCTATGCC GACGATGGCC AGCTGGTTGC CGTTGTCGAG
ACACTGCGCG ACATGACTGA TTACAAGAAC GCCCAGATGG CCTTGCAGCA GCAGGCCACG
ATGGACGGTC TGACGGGACT GGCCAACCGC CGCAGTTTCG ATGAGAAGCT GCATGTCGAA
TGGAGCCGGT CGCAGCGCTA CGGCGAGCCG ATTGCGCTGA TTTTGGCTGA CGTGGACTAT
TTCAAGCGCT ACAACGACTG CTACGGCCAT CAGGGTGGCG ATGAATGCTT GAAGGCCGTG
GCTGGTATTC TGCGGCGCGA GGTTTTTCGG CCGACCGACA TGGCGGCGCG CTATGGTGGC
GAGGAATTCG CGATCATTCT GCCCGGGACG GATTTGCAAG GCGCCCTGAC CGTGGCCGAG
CGCCTGCGTG CCGATATGGA GCGCTCAGCC TTGCCCCATG CGGCCAGCGA GGTGAGCCCG
TGGGTGACCT TGAGCATCGG TGTGGCGGCT ATCGTCCCCG ATCGTGAGGC GTTGTCGGCG
ACGCTCGTTG CCAAGGCCGA CAGGGCCTTG TACAAGGCCA AGGGGAGCGG CCGTAACGTG
GTTCGCGCCG GTGGCGATGA ACATTGA
 
Protein sequence
MAMMSSRKPA NQSQELSFAV NLMEHLVVPT FVVDAACRVL IWNRACERLT GVMASEVVGT 
VDHWQAFYDE PRLCLADALA KGMTADLDRL YSYHTEPSEH GHGMKAENWC VMPKMGERLY
LAIDAGPIYA DDGQLVAVVE TLRDMTDYKN AQMALQQQAT MDGLTGLANR RSFDEKLHVE
WSRSQRYGEP IALILADVDY FKRYNDCYGH QGGDECLKAV AGILRREVFR PTDMAARYGG
EEFAIILPGT DLQGALTVAE RLRADMERSA LPHAASEVSP WVTLSIGVAA IVPDREALSA
TLVAKADRAL YKAKGSGRNV VRAGGDEH