| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3735 |
|---|
| Symbol | |
|---|
| ID | 3567370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 4014124 |
|---|
| End bp | 4015623 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637682209 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_286934 |
|---|
| Protein GI | 71909347 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.129038 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCATG CCCTCCTTTT TTCCGTCTTT GTCATCGCCT CCTGCGGGCT GGCCTACGAG
CTGATTGCCG GCGCGCTATC GTCCTACCTG CTCGGCGATT CGGTGACGCA GTTCTCGACG
GTGATCGGTA CCTATCTTTT CGCCATGGGG GCCGGTTCGT GGTTGTCGAA ATACATTACC
CGCGACTTGA TCGGCCGCTT TATCCAGATC GAACTGATGG TCGGCTTGCT GGGCGGTTTC
TCGGCGGTTG GACTGTTCCT GGTGTTTACC TGGCTGTCAG CCCCCTTCAA GCTGGTGCTC
TATCTGGCGG TTTTCGGCGT CGGCGTTCTG GTCGGTCTGG AGATTCCGCT GGTCATGCGT
ATCCTGAAGC GCGAGCTGGC TTTCAAGGAT CTCGTATCGC AAGTCCTCAC TTTCGATTAT
CTCGGTGCGC TGGCAGTCTC CATTCTCTTT CCGCTGGTCC TTGCTCCACA ACTGGGCATG
GTCCGCACCG GGCTGCTGTT TGGTGTCCTG AACGTGGCGG TAGCGTTGTG GGCGTTGCAT
CTGTTTCGCG AGCAATTGCC GAGTCGCCGC TGGCTGGCGA TGCAAAGCTG GGGGGTGTTC
GGTCTGCTGG CGATCGGTTT TGCCGGAGCC GGGCAATTGA CGACCTTTGC CGAGGCACAC
CTCTACGCCG ATGAAATCGT CCATGCCGAA ACCACGCCTT ATCAGCGTAT TGTCGTTACC
CGTTGGCGCG ACGATCTGCG GCTCTTCCTG AACAATAATC TGCAATTTTC CTCGCATGAT
GAGTACCGTT ATCACGAGGC CTTGGTTCAC CCAGGGTTGG CTAGTCTGCC GGGGGCGAAG
CGGGTGCTGG TGCTGGGCGG TGGCGACGGG CTGGCCGTAC GCGAAATTCT CAAGTATCCG
AACGTCGAAT CGGTGACGCT GGTCGATCTC GATCCGGCGA TGACCGATCT ATTCGCAACG
GCACCGGCAC TGGTTGCATT GAATCAGGGG GCGCTGAAAT CGGAGCGGGT CACGGTGGTC
AACGCCGATG CCCTGCAATG GCTGGAGGAC AGCAAGGAGT ACTTTGACTT CATCGTCATC
GACTTTCCCG ATCCGGCCAA TTTTGCGCTC GGCAAGCTCT ATACCTCGGC GTTCTACCGG
CTGATCGAAA AACGGCTGTC GGCCCGTGGG CTGCTCGTCG TGCAATCGAC TTCCCCCCTC
TATGCCCGCC AATCGTTCTG GTGCGTGGTG GCAACGCTGG AAAGTGCGGG CTTCAAGACG
GCTCCCTACC ATGCGCTGGT GCCCTCTTTC GGTGAGTGGG GTTACATCAT TGCCGGCCGG
CAGGCGTTTT CGATGCCTGC GTTTGCTTCG GACAAAACCC GATTTTTGAC CAGCGAAACC
CTGGCCGGTA TGTTCAACTT TCCGGCCGAC ATGGCACGGG TACCGGCTGA AGTTAACCAG
CTGAACAATC AGGTATTGGT GCGCTACTTC GAGACTGAGT GGCGCAAGGT CATCCGCTAG
|
|---|
| Protein sequence | MRHALLFSVF VIASCGLAYE LIAGALSSYL LGDSVTQFST VIGTYLFAMG AGSWLSKYIT
RDLIGRFIQI ELMVGLLGGF SAVGLFLVFT WLSAPFKLVL YLAVFGVGVL VGLEIPLVMR
ILKRELAFKD LVSQVLTFDY LGALAVSILF PLVLAPQLGM VRTGLLFGVL NVAVALWALH
LFREQLPSRR WLAMQSWGVF GLLAIGFAGA GQLTTFAEAH LYADEIVHAE TTPYQRIVVT
RWRDDLRLFL NNNLQFSSHD EYRYHEALVH PGLASLPGAK RVLVLGGGDG LAVREILKYP
NVESVTLVDL DPAMTDLFAT APALVALNQG ALKSERVTVV NADALQWLED SKEYFDFIVI
DFPDPANFAL GKLYTSAFYR LIEKRLSARG LLVVQSTSPL YARQSFWCVV ATLESAGFKT
APYHALVPSF GEWGYIIAGR QAFSMPAFAS DKTRFLTSET LAGMFNFPAD MARVPAEVNQ
LNNQVLVRYF ETEWRKVIR
|
|---|
| |