| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3734 |
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| Symbol | |
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| ID | 3567369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 4012368 |
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| End bp | 4014116 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637682208 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_286933 |
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| Protein GI | 71909346 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 0.598305 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.143234 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGATC TCGTCGCCGC TACCGCAAGG CAGCCAGCCA CTGAAGGAGA AGTTCTCTCC
AGAGCGGCAT TACTACGCGC CTACGAGCAA AGTCAGGACG CCATTCTCGT CACCGATCGC
GACAATCTGA TCGTCGCGGC CAATGGCGCC TTTTGCCAGC TGAGTGGTTA TGCCTCCGAC
GAATTGCTTG GCAAGGATCC CCGGGTCCTT GCCTCCGATA ATTCGACAGC CGAACATTAT
GCGAGCATCT GGAACGCACT GGCCACAAAG GACTTCTGGG AAGGCGAGAT TTGGGACAAA
AACAAGAATG GCGAACGCTA TAACCGCTGG CTGAAGATTG CCGTCTTGCG GGACGCCGAG
GGCCAGATTG AAAATCATGT CGCCAATTTT TCAGAAATGG AAGCCAGCAA GGAATACGCC
GACCGGCTCG CCTATCTGGC TTACCACGAC CCGCTGACCA ACCTGCCCAA CCGGCTTGCT
TTCGAGTCGC AACTGGCGCA AGCCCTGCGT GGCTGCGAAC GCGACAACCG CCAGCTCGCG
CTGATGCTGA TTGACCTCGA CAATTTCAAG AACATCAACG ATACGCTCGG CCATCACGTC
GGTGATGAAC TGCTGCAAAA AGTCGCCTTG CGCCTGCGCG AAAGCGTGCG TTCCAGCGAT
CTCGTTGCCC GCATCGGTGG CGACGAATTC GTCATTGTTC TGCCGGAAAT CGAGTCCCCC
CTGACGGCCG CCCGGGTGGC CAACAAGGTG CAGCAGAACA TGGCCGACAG CTACAGGATT
GCCGATCACG CGCTGTATGC CACGCCGAGC ATTGGCATCA GCCTGTTTCC GATCGACGGC
AGCGACGCCA ACACCCTGCT ACGCAATGCC GATACCGCGA TGTATCACGC GAAAGACGCC
GGTCGCAACA ACCACCAGTT TTACACCGCC CGCATGAACG AGGCGGCGGG CGAACGACTG
CACATGGAAA ACGAACTTCG CCAGGCCATC TCGGCCATTT CGCCAGGCGA CAGCGAATTC
TCCCTGCACT TCCAGCCCCA AGTGCAAACA GCCACCGGCC AGGTGTTCGG GCTTGAGGCG
CTATTGCGCT GGAACAATCC GATCTTTGGG CAGGTTTCGC CGATGCGCTT CATTGCCATC
GCCGAAGAAA CCGGCTTGAT CCAGCCGCTT GGTGATTGGG TGATCTGGGA AACCTGTCGC
CTGATTCGCC AGATGAAGCA GCACGGCATA GAAGACATCC GCATTGCGAT CAACATTTCC
GCCCAGCAGC TACGCCACGA AAACCTGCTC CTGCTCGTCC GCGGCGCCCT GTCCTGCTAC
GACCTGCGCC CCGAAGACAT CGAACTCGAA ATCACGGAAA GCACGGCCAT GCAGAACCCG
GAAACCACGC TGTCGATACT CGACCAGCTG GCCGCAATGG GCATCGTCTT GGCCATTGAT
GACTTCGGTA CCGGCTACTC GTCGCTAGCC TATCTGAAGC ATCTGCCGAT CCAGCGCTTG
AAGCTGGACC GATCCTTCGT CAAGGACATC GAAATCGATG CCAACGATGC GGCCATCTGC
ACTGCAACCA TAGCGCTTGG CCACAGCCTG GGCCTGGAAC TGGTCGCCGA GGGCGTCGAA
ACCGAGGCGC AGCGTGCCTT CCTGGCCAGT CTCGGCTGCG ACACGCTGCA AGGCTATCTG
TACAGCAAGC CAATGCCCTT CGAGGAAACC ATCGCTTACC TCAAGGCGCA TCAGGCGGCT
CGGCCCTAG
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| Protein sequence | MTDLVAATAR QPATEGEVLS RAALLRAYEQ SQDAILVTDR DNLIVAANGA FCQLSGYASD
ELLGKDPRVL ASDNSTAEHY ASIWNALATK DFWEGEIWDK NKNGERYNRW LKIAVLRDAE
GQIENHVANF SEMEASKEYA DRLAYLAYHD PLTNLPNRLA FESQLAQALR GCERDNRQLA
LMLIDLDNFK NINDTLGHHV GDELLQKVAL RLRESVRSSD LVARIGGDEF VIVLPEIESP
LTAARVANKV QQNMADSYRI ADHALYATPS IGISLFPIDG SDANTLLRNA DTAMYHAKDA
GRNNHQFYTA RMNEAAGERL HMENELRQAI SAISPGDSEF SLHFQPQVQT ATGQVFGLEA
LLRWNNPIFG QVSPMRFIAI AEETGLIQPL GDWVIWETCR LIRQMKQHGI EDIRIAINIS
AQQLRHENLL LLVRGALSCY DLRPEDIELE ITESTAMQNP ETTLSILDQL AAMGIVLAID
DFGTGYSSLA YLKHLPIQRL KLDRSFVKDI EIDANDAAIC TATIALGHSL GLELVAEGVE
TEAQRAFLAS LGCDTLQGYL YSKPMPFEET IAYLKAHQAA RP
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