| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3727 |
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| Symbol | |
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| ID | 3568160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 4005579 |
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| End bp | 4007297 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637682200 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_286926 |
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| Protein GI | 71909339 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.239991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCGA AGTTCATCGC TGCCGCCATC TCCCTCGCCC TGGGCCTCAC CCAAGGCGGA
TACGGTCTGG CCGCCGACGA GCCCCCCGCC AAGCCTATCG CCAAACGCAT GGCGGCCCGC
GTAGCATCCT CGGAGGATCT GCTGGCACGC ACCGTTTTCC AGGCACTGGT CGGCGAATTC
GCCCTGCAGC GCGGTGATGC CAGGCTCGGC TCCGATGCCT GGACCGATCT CGCCCAACGT
ACCCGCGACC CCAAGGTGAT CGCCCGGGCC ACCGAAGTTG CCGGGTTTGC CCGCCAGTAT
GACCGCGCAC TCGAACTCTC GAAACTGTGG ATAGAAATCG AACCCGATTC CGCACAAGCC
AGACAAACGC AATCTTCCCT GCTGGTCATG GCCAACCGCC TTGACGACCT GGCGCCGCAA
CTGACTGCGC TACTTGAACA GGACAAGCCA AATCTGGCCA GCAACCTGCT GCATCTGAAT
CGCATGCTCT CCCGCATCGG CGACAAGAAA TCCGCACAAG CCCTGGTCGA TCGTATTGCA
ACCCCCTACG ACAGCCTGCC CGAGGCTCAT TTTGCGATGG CCCAGGCGGC ATCGAACGCC
AACGACAACC TGCGCGCCCT GAACGAAACA GAAAAGGCCT TGCAACTCCG CCCCGACTGG
GAAATGGCCG CGCTGGCTCG CGCCCAACTA CAAGCGCGCC AATCCGGCAA GACGGCGATA
GACAGCCTCG CAGACTTTGT CAGCCACAAC GCTACCGCCC GCGATGCCCG CCTGACCCTG
GCCCGTCTGC TGATCAGCGA AAAACGCTAC AGCGAAGCGC GCCAGCATTT TGATCGCCTG
ATCAAGGACA ACCCGGACAG CCCGGAAGTC ATTTACCCGG TTGCCATGCT CGCCCTGCAG
CAGGGTGACG CAAACACCGG CCGTAAACAG CTCGAACACT TGCTGACCAC CGACTTCCCG
GACAAAAACA CCGTGCACTT CTTCCTTGGC CAACTCGACC AGGAACAGAA AAAACCGGAA
ATGGCACTCG AGCACTTCCG CCAGGTCACT GGCGGCGAGC AATACATCGC GGCCCGCTCG
CGAGCCGCCC AGATCCTGCT GCAACAGGGC AAAAGCGAAG AGGCCCGCGA ACTCCTGCAC
AACACGCGCG GCGGCACGGT CGCCGAACGC ACCCAGTTAA CCCTGGCTGA ATCACAGCTA
TTGCGCGAAG CAGGCCGCCA TAACGACGCA TACATCGTTC TCGATAGTGC CCTTTCCGTG
CAACCCGACA ATACCGAGCT GCTCTACGAA GCAGGCCTGA CGGCAGAACG CATCGGCAAA
CCGGAGCTGC TTGAAACCCA CCTCAAACAA CTGCTCGCCA TCAAACCCGA CCATGCCCAC
GCCCTGAATG CACTGGGCTA CTCCTGGGCC GAACGCAACA TTCGCCTGCC GGAAGCCCAT
GACCTGATTG CCAAGGCGCT CAGTCTGGCA CCGGAAGATC CCTTCATCAT GGACAGCATG
GGCTGGGTGC TCTATCGCCA GGGCAAGCTC ACCGAAGCCC TGCAAACACT GGAGCAGGCC
TACAAGATCA AGGCCGACCC GGAAATTGCC GCCCACCTCG GCGAGGTTCT GTGGGCGCTG
GATCGCAAGG ACGAAGCCCG CAGTCTCCTC AAAGCGGCTG CCAAGGCCAA TCCAGACAAC
GAAGTGCTGA TCGGCGCCGT CAAGAAACTA CTGCCTTGA
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| Protein sequence | MSPKFIAAAI SLALGLTQGG YGLAADEPPA KPIAKRMAAR VASSEDLLAR TVFQALVGEF
ALQRGDARLG SDAWTDLAQR TRDPKVIARA TEVAGFARQY DRALELSKLW IEIEPDSAQA
RQTQSSLLVM ANRLDDLAPQ LTALLEQDKP NLASNLLHLN RMLSRIGDKK SAQALVDRIA
TPYDSLPEAH FAMAQAASNA NDNLRALNET EKALQLRPDW EMAALARAQL QARQSGKTAI
DSLADFVSHN ATARDARLTL ARLLISEKRY SEARQHFDRL IKDNPDSPEV IYPVAMLALQ
QGDANTGRKQ LEHLLTTDFP DKNTVHFFLG QLDQEQKKPE MALEHFRQVT GGEQYIAARS
RAAQILLQQG KSEEARELLH NTRGGTVAER TQLTLAESQL LREAGRHNDA YIVLDSALSV
QPDNTELLYE AGLTAERIGK PELLETHLKQ LLAIKPDHAH ALNALGYSWA ERNIRLPEAH
DLIAKALSLA PEDPFIMDSM GWVLYRQGKL TEALQTLEQA YKIKADPEIA AHLGEVLWAL
DRKDEARSLL KAAAKANPDN EVLIGAVKKL LP
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