| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3665 |
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| Symbol | |
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| ID | 3567607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3939779 |
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| End bp | 3940792 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637682138 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_286864 |
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| Protein GI | 71909277 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 59 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTTG TCGGTTTCCA GCTTCGCAAC AACCTGTTCG TCGCCCCCAT GGCCGGCGTG
ACGGATCGTC CTTTCCGCCA GTTGTGCAAG AAGATGGGGG CTGGCCTGGC CGTGTCCGAA
ATGGTCACCT CCAATTCATT GCTTTATGGC AGCGCCAAGA CGCTGCGCCG GGCCAATCAC
GAAGGTGAGG TCGCCCCGAT CTCGGTGCAG ATCGCCGGCG CCGATCCGAA AATGATGGCC
GAGGCGGCCA AACACAACGT CGACAACGGC GCCCAGATCA TCGACATCAA CATGGGTTGC
CCGGCCAAGA AGGTCTGCAA CGTGATGGCC GGCTCGGCGC TGATGCAGGA CGAGCAGCAG
GTCGGACGCA TTCTCGATGC CGTCGTTGCT GCAATCCCGA ACACCCCGGT CACGCTGAAA
TTCCGTACCG GCTGGAATCT GGCCAACAAG AACGCCCCGA CCATCGCGCG CATCGCCGAA
TCGGCGGGCA TCCGTGCCGT CGCCATCCAC GGCCGGACGC GCTGCCAGCA ATACACCGGC
GAGGCGGAAT ACGACACCAT CGCCATGGTC AAGACGCTGA TCAGCATCCC GGTCATCGCC
AACGGCGACA TCACGACCCC GGAAAAGGCC AAGCACGTGC TCGACGTGAC CGGCGCCGAT
GGCGTCATGA TCGGCCGCGC CGCCCAGGGT CGCCCCTGGC TGTTCCGCGA GATCGAACAC
TATCTAAAAA CCGGCGAGCA CCTGCCACCG GCCGAGGTCA TGGAGATTCA CAGCATCCTG
CTGGAGCATC TCGAAGACCT TTACGCTTTC TACGGCCCGG AAACGGGGTT CAAGGTCGCC
CGCAAGCACA TCTCCTGGTA CACCAAGGGG TTGGTTGGCT CGGCGGCCTT CCGCAAGGAA
ATGAACGTCC TGCCCAGCAT CGATCAACAG ATGCAGGCAG TGAACGACTT CTTCAGCCGA
CTGGCGGCTG AGCATCAGCA TTTGAAATAC ACAGAGGAGG CGTTGGCAGC ATGA
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| Protein sequence | MDFVGFQLRN NLFVAPMAGV TDRPFRQLCK KMGAGLAVSE MVTSNSLLYG SAKTLRRANH
EGEVAPISVQ IAGADPKMMA EAAKHNVDNG AQIIDINMGC PAKKVCNVMA GSALMQDEQQ
VGRILDAVVA AIPNTPVTLK FRTGWNLANK NAPTIARIAE SAGIRAVAIH GRTRCQQYTG
EAEYDTIAMV KTLISIPVIA NGDITTPEKA KHVLDVTGAD GVMIGRAAQG RPWLFREIEH
YLKTGEHLPP AEVMEIHSIL LEHLEDLYAF YGPETGFKVA RKHISWYTKG LVGSAAFRKE
MNVLPSIDQQ MQAVNDFFSR LAAEHQHLKY TEEALAA
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