| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3657 |
|---|
| Symbol | |
|---|
| ID | 3567599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3929691 |
|---|
| End bp | 3930680 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637682130 |
|---|
| Product | pyridoxal phosphate biosynthetic protein PdxA |
|---|
| Protein accession | YP_286856 |
|---|
| Protein GI | 71909269 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 0.242862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCGC TTATTGCCGT CACCAGCGGC GAACCGGCCG GCATCGGGCC GGAACTTTGT
TTGCGGCTGG CCGACTACGA CGGTGCTGCC CATCCGGTGG TTCTTGGTGA TCGTTCTCTC
CTCGAGGCGC GCGCGGCTCA GCTCGGGCTG AACGTGGCTT TTCGCGATTA CACCGCGGGG
CAAGCTCAAG CGCCAGGGAG CCTCGACGTG CTGCATATTC CTCTGGCCGT TTCATCGCAG
GCTGGCCAGC TGGATGCGGC CAACGGCCTC TATGTCCTTT CCCTGCTCGA CCGCGCGCTG
GCCGGCTGTC AATCCGGCGA GTTCGCTGCG ATGGCGACAG CGCCGGTGCA CAAGGGGGTG
GTCAACGAAG CCGGTGTGCA TTTCACCGGT CACACCGAAT ACCTTGCTGA AAAAACCGAC
ACGCCGCTGG TCGTCATGAT GCTGGCCGGT GAAACTGAAC GCGGGCCGCT ACGCGTTGCC
CTGGTGACAA CGCACCTGCC ATTGAAAGAT GTGCCGGCAG CGATTACTGC CGAGGTGCTG
GAAAAAACGC TGCGCATCCT GCATGCCGAC CTGCGCGCCA AATACGGCCT TGCCCAGCCG
CGTATCCTGG TTGCCGGCCT CAACCCGCAC GCTGGTGAAG GCGGTTATCT CGGCATGGAA
GAAATCGAAG TCATCACGCC GGTACTGCAA AAGCTGCGGG CCGAGGGCAT GGTGCTGTCC
GGCCCTTACC CGGCCGATAC CATGTTTACG CCACCTATCC TCGCCCAGGG CGACGCGGTG
CTCGCCATGT ATCACGACCA GGGGCTGACC GCATTGAAGT ACGCCACTTT CGGCAAAGGC
ATCAACGTCA CGCTTGGCCT GCCCATCATT CGCACCTCGG TCGATCACGG AACCGCATTG
GAATTGGCCG GTACCGGCAA GGCCGATCCG GGCAGCCTGT TCGAATCGAT TGCCGAAGCG
GCACGCATGG CTCAAAGGAG CATTCAATGA
|
|---|
| Protein sequence | MHPLIAVTSG EPAGIGPELC LRLADYDGAA HPVVLGDRSL LEARAAQLGL NVAFRDYTAG
QAQAPGSLDV LHIPLAVSSQ AGQLDAANGL YVLSLLDRAL AGCQSGEFAA MATAPVHKGV
VNEAGVHFTG HTEYLAEKTD TPLVVMMLAG ETERGPLRVA LVTTHLPLKD VPAAITAEVL
EKTLRILHAD LRAKYGLAQP RILVAGLNPH AGEGGYLGME EIEVITPVLQ KLRAEGMVLS
GPYPADTMFT PPILAQGDAV LAMYHDQGLT ALKYATFGKG INVTLGLPII RTSVDHGTAL
ELAGTGKADP GSLFESIAEA ARMAQRSIQ
|
|---|
| |