| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3606 |
|---|
| Symbol | |
|---|
| ID | 3568270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3872778 |
|---|
| End bp | 3875801 |
|---|
| Gene Length | 3024 bp |
|---|
| Protein Length | 1007 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637682079 |
|---|
| Product | 50S ribosomal protein L13E |
|---|
| Protein accession | YP_286805 |
|---|
| Protein GI | 71909218 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02243] conserved hypothetical protein, phage tail-like region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.975656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000178294 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCG ACCGCATCCT GCAAAACGAA ATTGCCCGGC TCGGGCAGAG CCAGGAAGAC
CGCTCGCCGG CCGCGCTCGA CCCCGCTTTT GCCCCGGTCG ATGGTCGCAG CCCGGCCGAT
CGCGTCGCCG AAGCGCGCCG GCTGGCCGCC CAGTTGCGCT ATTACGGCTT CGATCCGGAC
AAGGCCGATG GTGACTGGCA AGGTCTTTTT CCGGCTGACG CCGAGCAGGC ACTTACTCGC
GACGATGGCG GCGTACCGCC GCATCTCGGC CTGTTTGGTG CCTTCCTCGA TATGCTGGAT
CCAGCGAAAG ATGCGCTGAA CGACCTGACC GCCCGCCACC TTGATTTCCA GTATCGCCGG
GTGCTCGGTT TCGAACCGCT GCCGGCCGAA CCCGAGCATG CCCACCTGAC GCTGGAACTG
AAGAAAGGCA CGGCGCCCTT TGCCATTACG CCGGCTCATC GTTTCACGGC CGGCAAGGGC
GCCGATGGCA GCGAACGCCT CTACGCCCCG CTGCGCGAAA CGCTGATCGG CCAAGGCAAG
ATTGCCGCGC TGCACAGCGT CTATCGCGAT GCCGGCGGCG TGCGTTTCGC CCCGGTTGCC
AATTCGGCCG ATGGCCTCGG CACGCCGCTC GATCCGGCCA AGCCGCACTG GTCGGCTTTC
GGCCACGCCG GGCTGGCCGC AGCGCCGCTC GGCTTTGCGC TGGCCTCGTC ACTGCTGCGG
CTGCGCGAAG GGCGGCGCGA GGTGGCGGCG ACGCTCGATG TTGCCTTTGC CGACAGCGTC
GGGCTGAGCG GGCAGGCCAT CGCCGACTGC CTGCAGGCCT TTGTCAGTGG TGAAAAAGGC
TGGCTTGGGC CGTATCCGCT GACTGGCACG CTGAGCGCCG GCCACTTGAA ACTCGGTTTT
ACGGTGCCGG ATGGCGAACC GGCCGTGGTT GATTACGACG CCGCACTGCA TGGCTCGGCC
TTCGCCACCG CGCTGCCGGT CGTCCAGTTG CTGCTCCGGC CCGAATCCGC CGCTGCCTAC
GCGGCACTGT CGCAACTGCG GCTCGACAAG GCCCGACTGA GTGTCACGGT CGACGGCATG
AAAACGCTGG ATCTCGAAAA CGATTTCGGC AGCCTCAACC CGAAAAAGGC CTTCCAGCCC
TTCGGCCCGC AGCCGGTCAA AGGTTCGCGG TTCATGGTCG GTTGCCCCGA GGCGCTGAGC
AAACCGCTGA CCGACCTGAA AATCCGTTTG CGCTGGCAGG GTGCGCCCGG CGACTTCGCC
GGCTGGTATG CCTGCTACAA GAACGTCGCC GCCGTCAGTA ACGGCATCGC AGCCCGGCTG
GTTTATCAGG ATGCCGGCGG CAGCGAGACC TCGCGCGAGC TGAACCTGAT GAACCGTGTC
GATGGCGTCA GCACGCTGAG CCCGAGTGCG CCGGCGACCG CCTTCACGCC GCTCTACGTC
GGGCAGAATT TCGTCTATTC GATGCTCAGC GGCGGCAGTT TCATCAGCCG CCTGTTCGGC
AAGCGCTTCA TGCAGGCGCA GCCGGTCTAT CAGCGGGAAA ACGTGCCGCC ACCGGCTGCG
CGCAGCGGCT TTGTCACCGT GGCGCTGATC GAGGATTTCC TGCACGCCGA CTACCGCCGC
GAGACGATGG AAGAGGCGCG CAAGACTTCG CCCAAGGTGC TGAACGAACC CTATACGCCG
GTGGTGCAGG AGATCACGCT GGCCTACGCC GCCCAATCGC CGGTCGCCGA CCTGACACTT
GACGATCAGG ACGCCTTCGC CGCCTCGCTC GACCTGCAGT TCTTCCATGT CGGCGCCTTT
GGCCCGCGCC GCGAACACCC CTTCCTGCGC CGCCAACTCG GCTGGGTCAG CGAAAAGAAA
ATCAGCCTGC TGCCGAGCTA TCCCGACGAA GGCGAATTGA TCGTCGGCGT CGATGGCGTC
GGGGCCGGCG ACAGCATTCA CCTGCTGCTG CAGGTTGCCG AGGGCAGTGC CGATCCCGAG
TTGCAGGCGC AGCCGGTCAA ATGGTCGGTG CTCTGCGACA ACCACTGGCG CCCCGCGGCG
CCGGAGGAAT TCGCCCTCGA CACCAGCCGC GGCCTGCGCG CCAGCGGCCT CGTCGGCCTG
GTGCTGTCGC GCTCGACGAC GACCGACAAC AGCTGGTTGC CGGCTGGTCC GGTCTGGCTC
AAGGCAGCCG TGAACAAGGA CAGCGCGGGG GCCTGCAAGC TGCTCGCCGT GCACGCCAAC
GGCGTCGAAG TGGTGCGTGA CTGGTCGGCT GCTGCGACGG CGCCGGCCGT TGAAACGCTG
GCCCCGGGCA GTATCGCCAA ACTGCTGGCG CCGCCCGCCG CGCTCAAGCA GGTGGCCCAG
CCCTACGCCA GTTTTGGCGG GCGGGCCGGC GAAAGTGCTG CCATGCTCAA CCGTCGTGCG
GCCGAGCGCT TGCGCCATCG CCAGCGCTGC ATCACGCCCT GGGATTACGA GCGACTGCTG
CTCGAAAACT TCCCCGGCGT GCATCGCGTC AAGTGCATTC CGCATGCCAG CGAAACATCG
TGGATGGCGC CCGGCCACCT GTTGATCGTC GCCATTCCCG ACCTGCGCAA CCGCAACCTG
CCCGACTTGC TGCAACCCAA GGTCGATCTC GACACCTTGA CGCAAATGAC CGAGTTGGCC
CAGGCGCATG CCTCGCCGCA GGTCACGGTG CGCGTTCGCA ACCCGGCTTA CCAGGCCATC
CGGCTCGATT TCAAGGTTCG CTTCCGGGCC GGCTATCCCT TCGACTACAC CCGCCGGCAA
CTGCACGAAG CCATCGTCCA GGCGCTGTCG CCGTGGGCTT TCGCGGCCGG CCGGCAGCTC
GATTTCGGCG GCCGCATCTA CCGTTCGGTG TTGCTCGATT TCATCGAGGA GCTGCCTTAC
GTCGATTTCG TCACCGACTT CCGCTGCGGT CTGGCCGGCA GCGGCGACCT GTTGCTCAAC
GATGTCGCCG AGATCGTCGC CGAACGGCCC GACACCATCC TCGTTTCGGC GGCCCGGCAT
GTGATTGCCG AAGCCACCGA CTGA
|
|---|
| Protein sequence | MASDRILQNE IARLGQSQED RSPAALDPAF APVDGRSPAD RVAEARRLAA QLRYYGFDPD
KADGDWQGLF PADAEQALTR DDGGVPPHLG LFGAFLDMLD PAKDALNDLT ARHLDFQYRR
VLGFEPLPAE PEHAHLTLEL KKGTAPFAIT PAHRFTAGKG ADGSERLYAP LRETLIGQGK
IAALHSVYRD AGGVRFAPVA NSADGLGTPL DPAKPHWSAF GHAGLAAAPL GFALASSLLR
LREGRREVAA TLDVAFADSV GLSGQAIADC LQAFVSGEKG WLGPYPLTGT LSAGHLKLGF
TVPDGEPAVV DYDAALHGSA FATALPVVQL LLRPESAAAY AALSQLRLDK ARLSVTVDGM
KTLDLENDFG SLNPKKAFQP FGPQPVKGSR FMVGCPEALS KPLTDLKIRL RWQGAPGDFA
GWYACYKNVA AVSNGIAARL VYQDAGGSET SRELNLMNRV DGVSTLSPSA PATAFTPLYV
GQNFVYSMLS GGSFISRLFG KRFMQAQPVY QRENVPPPAA RSGFVTVALI EDFLHADYRR
ETMEEARKTS PKVLNEPYTP VVQEITLAYA AQSPVADLTL DDQDAFAASL DLQFFHVGAF
GPRREHPFLR RQLGWVSEKK ISLLPSYPDE GELIVGVDGV GAGDSIHLLL QVAEGSADPE
LQAQPVKWSV LCDNHWRPAA PEEFALDTSR GLRASGLVGL VLSRSTTTDN SWLPAGPVWL
KAAVNKDSAG ACKLLAVHAN GVEVVRDWSA AATAPAVETL APGSIAKLLA PPAALKQVAQ
PYASFGGRAG ESAAMLNRRA AERLRHRQRC ITPWDYERLL LENFPGVHRV KCIPHASETS
WMAPGHLLIV AIPDLRNRNL PDLLQPKVDL DTLTQMTELA QAHASPQVTV RVRNPAYQAI
RLDFKVRFRA GYPFDYTRRQ LHEAIVQALS PWAFAAGRQL DFGGRIYRSV LLDFIEELPY
VDFVTDFRCG LAGSGDLLLN DVAEIVAERP DTILVSAARH VIAEATD
|
|---|
| |