Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3588 |
Symbol | |
ID | 3567898 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 3842471 |
End bp | 3844954 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637682061 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_286787 |
Protein GI | 71909200 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0360121 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACATCAG CAGACGCATC CGCGCTACCC TCTGGCGATA TCGGCCGCCA GCTAGCCTAT TTGCAGGCAG TCGTCTCGAA CATGCCGCAA GGCATCAGCG TCTTTGACGA GCAGTTACGC CTGCGTGTCT GGAACCAGGG TTTCATCAAT GTATTGAACC TGCCGCCGGA AATCGTTTAC GAAGGCGTTC ACTTTTCAGA ACTGGTCCGG GTACCGGCTC AACGGGGCGA ATATGGCCCG GGCGAGCCCG AGGCCCACGT CGAGCGCATC ACGGCGCTGG CCAACAAATT TGAAGCACAC AGCTTCGAGC GGACTCGACC AAACGGAAAC ACTCACCTGG TTCAGGGTGA ACCGCTATTC ATTGACCAAC AACTGGTCGG CTTCATTACA ACCTACACCG ACATTACCGA CCGAAAAGCC GCTGAAACAG CACTCCGGAC GCAGCACAAT CAATTGCAGA CAGTGATCGA AAGCATTCCC AGTGCGGTCA GCCTGTTTGA TAGCGCTGGC AATCTCGTGC TGTTCAATAC CGCATTTCCG CGCCTGCTGG ATGTCCCGGC CGAACTCGCG AAGCCGGGCG TTTCGATGGA GACCCTGTTC CGCTTCAACG CCATGCGTGG GGAATACGGC CCCGGTGATC CGGAAAAGAT CGTGGCCACC CTGATGGAGC GAGCCAAGAA CCCGAGCCAT CACTATTTTG AACGCACCCG ACCAAACGGA AAGACCCTCG AAGTCCGCGG CGTTCCGCTG GCCGAAGGGG GATTTGTCAC TGTTTACACC GACATATCCG AACGGCGCGC CAGCGCCGAA CGCGAGCAAC TGGCACAAAA AGTCTACAGC CATACGCCGG CCGGCATCAT CTTCACCGAC GACCAACACC GTATCCTGTC GATCAACCCG GCCACGACCG AGATGACGGG CTATGAGCCG TTTGAACTGA TCGGCCAGAC CGTGTTCGGC CTGATCAGTC TGGACGAAGG CATCTCGCAG AAAGACTTCC AGGAACAGAT CTCCATGCGC GGCTCATGGA GCAGCGAACT CGAAGTCACC CAGAAAAACG GCAGCAACTT CCCTGCCGGC GCACGAATCA ACCGCGTCGA CGACCCGCAA AGCGGCCTGC CCGCCCATTA CGTCTGGATT CTGGCCGACA TTACCGAGCG CAAGCAGGCG GAAGACCGCA TGCGGCATAT CGCCCAGCAT GATGCGCTGA CCGGGCTGCC GAACCGCCTC GCGCTGCTGA TGCGCCTTGC CCAGCTATTG CCGGAGGCGC GCCGACACGG CTGGACGGTG GCGGTCATGT TCATTGACCT CGACCGTTTC AAGATCATCA ACGACACCCT GGGGCACCAG GTCGGTGACG AGATGTTGCG CGAAGTCGCC TGCCGCCTGT CGAACCTGCT CCGGGAAACT GATTTTGTTG CCCGCCTGGG GGGGGACGAG TTCGTCATCA TCCTACCCAG CATCAGCTCC CCGGCCGACG CGGCCATTGT CTCCGGCAAG ATCATCTCGG CGCTCTCCAC GGCCATCGAA GCCGAAGGCC ACGAATTGCA CACCAGCCCG TCGATCGGTA TCAGCATCTT TCCGGACGAC GGTCCCGATG GCGATATCGT TCTCAAGAAC GCCGACACCG CGATGTACCA TGCCAAGGCA GCCGGCCGTA ACAACTACCA GTTCTTCGCT GCGGACATGA ACCGCACGGC GGCCGAGCGC CTGAACATCG AGCGCAAGCT GCGCCATGCC ATCGCCCGCA ACGAATTGAG CCTAGTCTTC CAGCCCCAGT TCCGTGCCGA GGACACCACC CCGACCGGTG TCGAGGCGCT GCTCCGCTGG CACCACCCGA CCGACGGCAT GATTTCCCCG GCCCGTTTCA TTCCGGTGGC CGAGGAAACC GGCATGATCG TCGAAATCGG CGACTGGGTC CTGGCCACCG CCTGCCACGA GATGGCCCGC TGGATCAACG CCGGCCTGAA GCCACTGCGG ATTGCCGTCA ATGTCTCGGC CCGCCAGCTA CGCCGCCGCG ATTTTTGCGA AACCGTCGCC AACGCCCTGA CGACCTCCGG CTTGCCGGCC GAACTGCTGG AACTCGAAAT TACCGAAAGC TCGGTGATGG AGAATCCGCA GGAAGCCATC CACATTCTGG AGCGACTGGG CCGCATGGGC GTCACACTGG CCATCGACGA TTTCGGCACC GGCTATTCCT CGTTGGCCTA CCTGAAACTC TTCCCGATCG ACCATCTGAA AATCGACCGT TCCTTCGTCG CCGATATCGA GCATGACCTG AACGACCGTG CCATCGCTTT CGGCACCATC GCACTGGCCC ACTCCCTCGG CCTGAACGTC ATTGCCGAAG GGGTCGAAAC CGAAGACCAG CACGAACTGC TGCGCGCCAA CGGCTGCGAT GAAGTCCAGG GCTTCCTGTT CAGCAAGCCG CTGACCGGCG CCGCGGCATT CGCCTTCCTG CACGCCCGGG ACACAGCAGA GTAA
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Protein sequence | MTSADASALP SGDIGRQLAY LQAVVSNMPQ GISVFDEQLR LRVWNQGFIN VLNLPPEIVY EGVHFSELVR VPAQRGEYGP GEPEAHVERI TALANKFEAH SFERTRPNGN THLVQGEPLF IDQQLVGFIT TYTDITDRKA AETALRTQHN QLQTVIESIP SAVSLFDSAG NLVLFNTAFP RLLDVPAELA KPGVSMETLF RFNAMRGEYG PGDPEKIVAT LMERAKNPSH HYFERTRPNG KTLEVRGVPL AEGGFVTVYT DISERRASAE REQLAQKVYS HTPAGIIFTD DQHRILSINP ATTEMTGYEP FELIGQTVFG LISLDEGISQ KDFQEQISMR GSWSSELEVT QKNGSNFPAG ARINRVDDPQ SGLPAHYVWI LADITERKQA EDRMRHIAQH DALTGLPNRL ALLMRLAQLL PEARRHGWTV AVMFIDLDRF KIINDTLGHQ VGDEMLREVA CRLSNLLRET DFVARLGGDE FVIILPSISS PADAAIVSGK IISALSTAIE AEGHELHTSP SIGISIFPDD GPDGDIVLKN ADTAMYHAKA AGRNNYQFFA ADMNRTAAER LNIERKLRHA IARNELSLVF QPQFRAEDTT PTGVEALLRW HHPTDGMISP ARFIPVAEET GMIVEIGDWV LATACHEMAR WINAGLKPLR IAVNVSARQL RRRDFCETVA NALTTSGLPA ELLELEITES SVMENPQEAI HILERLGRMG VTLAIDDFGT GYSSLAYLKL FPIDHLKIDR SFVADIEHDL NDRAIAFGTI ALAHSLGLNV IAEGVETEDQ HELLRANGCD EVQGFLFSKP LTGAAAFAFL HARDTAE
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