Gene Daro_3588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3588 
Symbol 
ID3567898 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp3842471 
End bp3844954 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content61% 
IMG OID637682061 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_286787 
Protein GI71909200 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0360121 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACATCAG CAGACGCATC CGCGCTACCC TCTGGCGATA TCGGCCGCCA GCTAGCCTAT 
TTGCAGGCAG TCGTCTCGAA CATGCCGCAA GGCATCAGCG TCTTTGACGA GCAGTTACGC
CTGCGTGTCT GGAACCAGGG TTTCATCAAT GTATTGAACC TGCCGCCGGA AATCGTTTAC
GAAGGCGTTC ACTTTTCAGA ACTGGTCCGG GTACCGGCTC AACGGGGCGA ATATGGCCCG
GGCGAGCCCG AGGCCCACGT CGAGCGCATC ACGGCGCTGG CCAACAAATT TGAAGCACAC
AGCTTCGAGC GGACTCGACC AAACGGAAAC ACTCACCTGG TTCAGGGTGA ACCGCTATTC
ATTGACCAAC AACTGGTCGG CTTCATTACA ACCTACACCG ACATTACCGA CCGAAAAGCC
GCTGAAACAG CACTCCGGAC GCAGCACAAT CAATTGCAGA CAGTGATCGA AAGCATTCCC
AGTGCGGTCA GCCTGTTTGA TAGCGCTGGC AATCTCGTGC TGTTCAATAC CGCATTTCCG
CGCCTGCTGG ATGTCCCGGC CGAACTCGCG AAGCCGGGCG TTTCGATGGA GACCCTGTTC
CGCTTCAACG CCATGCGTGG GGAATACGGC CCCGGTGATC CGGAAAAGAT CGTGGCCACC
CTGATGGAGC GAGCCAAGAA CCCGAGCCAT CACTATTTTG AACGCACCCG ACCAAACGGA
AAGACCCTCG AAGTCCGCGG CGTTCCGCTG GCCGAAGGGG GATTTGTCAC TGTTTACACC
GACATATCCG AACGGCGCGC CAGCGCCGAA CGCGAGCAAC TGGCACAAAA AGTCTACAGC
CATACGCCGG CCGGCATCAT CTTCACCGAC GACCAACACC GTATCCTGTC GATCAACCCG
GCCACGACCG AGATGACGGG CTATGAGCCG TTTGAACTGA TCGGCCAGAC CGTGTTCGGC
CTGATCAGTC TGGACGAAGG CATCTCGCAG AAAGACTTCC AGGAACAGAT CTCCATGCGC
GGCTCATGGA GCAGCGAACT CGAAGTCACC CAGAAAAACG GCAGCAACTT CCCTGCCGGC
GCACGAATCA ACCGCGTCGA CGACCCGCAA AGCGGCCTGC CCGCCCATTA CGTCTGGATT
CTGGCCGACA TTACCGAGCG CAAGCAGGCG GAAGACCGCA TGCGGCATAT CGCCCAGCAT
GATGCGCTGA CCGGGCTGCC GAACCGCCTC GCGCTGCTGA TGCGCCTTGC CCAGCTATTG
CCGGAGGCGC GCCGACACGG CTGGACGGTG GCGGTCATGT TCATTGACCT CGACCGTTTC
AAGATCATCA ACGACACCCT GGGGCACCAG GTCGGTGACG AGATGTTGCG CGAAGTCGCC
TGCCGCCTGT CGAACCTGCT CCGGGAAACT GATTTTGTTG CCCGCCTGGG GGGGGACGAG
TTCGTCATCA TCCTACCCAG CATCAGCTCC CCGGCCGACG CGGCCATTGT CTCCGGCAAG
ATCATCTCGG CGCTCTCCAC GGCCATCGAA GCCGAAGGCC ACGAATTGCA CACCAGCCCG
TCGATCGGTA TCAGCATCTT TCCGGACGAC GGTCCCGATG GCGATATCGT TCTCAAGAAC
GCCGACACCG CGATGTACCA TGCCAAGGCA GCCGGCCGTA ACAACTACCA GTTCTTCGCT
GCGGACATGA ACCGCACGGC GGCCGAGCGC CTGAACATCG AGCGCAAGCT GCGCCATGCC
ATCGCCCGCA ACGAATTGAG CCTAGTCTTC CAGCCCCAGT TCCGTGCCGA GGACACCACC
CCGACCGGTG TCGAGGCGCT GCTCCGCTGG CACCACCCGA CCGACGGCAT GATTTCCCCG
GCCCGTTTCA TTCCGGTGGC CGAGGAAACC GGCATGATCG TCGAAATCGG CGACTGGGTC
CTGGCCACCG CCTGCCACGA GATGGCCCGC TGGATCAACG CCGGCCTGAA GCCACTGCGG
ATTGCCGTCA ATGTCTCGGC CCGCCAGCTA CGCCGCCGCG ATTTTTGCGA AACCGTCGCC
AACGCCCTGA CGACCTCCGG CTTGCCGGCC GAACTGCTGG AACTCGAAAT TACCGAAAGC
TCGGTGATGG AGAATCCGCA GGAAGCCATC CACATTCTGG AGCGACTGGG CCGCATGGGC
GTCACACTGG CCATCGACGA TTTCGGCACC GGCTATTCCT CGTTGGCCTA CCTGAAACTC
TTCCCGATCG ACCATCTGAA AATCGACCGT TCCTTCGTCG CCGATATCGA GCATGACCTG
AACGACCGTG CCATCGCTTT CGGCACCATC GCACTGGCCC ACTCCCTCGG CCTGAACGTC
ATTGCCGAAG GGGTCGAAAC CGAAGACCAG CACGAACTGC TGCGCGCCAA CGGCTGCGAT
GAAGTCCAGG GCTTCCTGTT CAGCAAGCCG CTGACCGGCG CCGCGGCATT CGCCTTCCTG
CACGCCCGGG ACACAGCAGA GTAA
 
Protein sequence
MTSADASALP SGDIGRQLAY LQAVVSNMPQ GISVFDEQLR LRVWNQGFIN VLNLPPEIVY 
EGVHFSELVR VPAQRGEYGP GEPEAHVERI TALANKFEAH SFERTRPNGN THLVQGEPLF
IDQQLVGFIT TYTDITDRKA AETALRTQHN QLQTVIESIP SAVSLFDSAG NLVLFNTAFP
RLLDVPAELA KPGVSMETLF RFNAMRGEYG PGDPEKIVAT LMERAKNPSH HYFERTRPNG
KTLEVRGVPL AEGGFVTVYT DISERRASAE REQLAQKVYS HTPAGIIFTD DQHRILSINP
ATTEMTGYEP FELIGQTVFG LISLDEGISQ KDFQEQISMR GSWSSELEVT QKNGSNFPAG
ARINRVDDPQ SGLPAHYVWI LADITERKQA EDRMRHIAQH DALTGLPNRL ALLMRLAQLL
PEARRHGWTV AVMFIDLDRF KIINDTLGHQ VGDEMLREVA CRLSNLLRET DFVARLGGDE
FVIILPSISS PADAAIVSGK IISALSTAIE AEGHELHTSP SIGISIFPDD GPDGDIVLKN
ADTAMYHAKA AGRNNYQFFA ADMNRTAAER LNIERKLRHA IARNELSLVF QPQFRAEDTT
PTGVEALLRW HHPTDGMISP ARFIPVAEET GMIVEIGDWV LATACHEMAR WINAGLKPLR
IAVNVSARQL RRRDFCETVA NALTTSGLPA ELLELEITES SVMENPQEAI HILERLGRMG
VTLAIDDFGT GYSSLAYLKL FPIDHLKIDR SFVADIEHDL NDRAIAFGTI ALAHSLGLNV
IAEGVETEDQ HELLRANGCD EVQGFLFSKP LTGAAAFAFL HARDTAE