| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3496 |
|---|
| Symbol | ddl |
|---|
| ID | 3567764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3744458 |
|---|
| End bp | 3745363 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637681968 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_286695 |
|---|
| Protein GI | 71909108 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 0.303259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.188396 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTT TCGGAAAAGT TGCAGTCCTC TTTGGCGGAA CATCCGCCGA GCGCGAGGTC
TCCCTGAACA GCGGTTCGCG CGTGTTGGCC GCATTGCAAG GGCAGGGCAT CGACGCCCAC
GCCTTCGATC CGGCCGAGCA GCCGCTTGAT GCGCTGAAGG GCTACGACCG CGCCTTCATC
GCACTGCATG GTCGCCACGG CGAAGATGGC ACCATCCAGG GCGCGCTGGA AGTCATGCAC
ATTCCCTACA CCGGCTCTGG CGTGCTCGCC TCGGCGCTGG CCATGGACAA GTTCCGCACC
AAGCTGATGT GGCGGGCGGC CGGTCTGGCC ATTCCCGAAT ATGCCCTGCT GACGGCCGAT
TCCGACTTTG CCGACATTGA GGAAGAACTC GGTCTGCCTC TGTTCGTCAA GCCGGCCCGC
GAAGGCTCGT CGATCGGCGT GACCAAGGTC AAGGAGCGCG GCGCCCTGAA GGCCGCCTAC
GAAGAAGCTG CCCGGCACGA TCCGCTGGTC ATCGCCGAAA AGGGCGTCAT GGGTGGCGAA
TACACGGTCG GCATCATTGG CGACGAAGCC ATGCCGATCA TCAAGATCGA GCCGGCCACC
GAGTGGTACG ACTACGAAGC CAAGTACAAC CGCGACGATA CGCGTTACCT GTGTCCGTGC
GGCCTGCCGG AAGCCAAGGA AATGGAAATC CGCAAAGGCG CACTGGAAGC CTTCCGCATT
CTGGGCGGCC GTGGCTGGGG CCGGGTCGAT TTCCTGATGG ACGAGGACGG CAAGTATTAC
TTCCTGGAAG TGAACACCGC GCCGGGCATG ACCGACCATT CGCTGGTGCC GATGGCGGCG
CGGGTGAACG GCATGGACTA CCCGACGCTG GTTCGTCGCG TCCTCGAACT GGCTGCCAAC
GACTGA
|
|---|
| Protein sequence | MSSFGKVAVL FGGTSAEREV SLNSGSRVLA ALQGQGIDAH AFDPAEQPLD ALKGYDRAFI
ALHGRHGEDG TIQGALEVMH IPYTGSGVLA SALAMDKFRT KLMWRAAGLA IPEYALLTAD
SDFADIEEEL GLPLFVKPAR EGSSIGVTKV KERGALKAAY EEAARHDPLV IAEKGVMGGE
YTVGIIGDEA MPIIKIEPAT EWYDYEAKYN RDDTRYLCPC GLPEAKEMEI RKGALEAFRI
LGGRGWGRVD FLMDEDGKYY FLEVNTAPGM TDHSLVPMAA RVNGMDYPTL VRRVLELAAN
D
|
|---|
| |