| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3466 |
|---|
| Symbol | |
|---|
| ID | 3567334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 3715813 |
|---|
| End bp | 3717012 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637681938 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_286665 |
|---|
| Protein GI | 71909078 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTGGT CCGATGCCTT CCAGCTTGCC CTGCGCGCCA TTACCGCCCA GCGCCTGCGC
AGCTTCCTTA CCCTGCTCGG CATTGCCGTC GGCATTGCGG CGGTGATCCT GCTCACCTCG
ATCGGCGAAG GCATTCACCG CTTCGTGCTC GGCGAATTCA CCCAGTTCGG GACCAATGTC
ATTACCGTCG CTCCGGGCAA GACCAAGACT GGCGGCTCCC CCTCCGGCCT GCCGTCGAGT
GCCCGCCCGC TGTCACTGGA CGACGCCAAA TCGATCGAAC GCCTGCCCCA TGTCGTTGCC
GTCACGCCCA ATGTCCGCGG CAATGCCGAA GTTGAAGGCA ATGGCCGGAC ACGGCGCACA
CTGATCTACG GCGTCAATTC AAAACTCCCC CTGATTTTCC GGTCGACAGT GCAGAGCGGC
CAGTTTTTGC CCGCTGACGA TGAAGGCAGC GCCCGTCCCT TCGTCGTCCT CGGTTCCAAA
CTAAAGAATG AATTGTTCGG CAGCGAAAAT CCGCTTGGCC AGCGCCTGCG CATCAGCGGT
CTGCACTTCC GGGTCATTGG CGTACTGGCC CCCAAAGGCC AGTTCCTCGG CATTGACCTC
GACGACACCG CTTTCGTGCC CACCGCCCGC GCCCAGGAGT TGTTCAACCG CGAAGGAGTC
GATGAAATCA ACATTGCCGC CGAAGAGGGC ATTCCCTCCG CCATCGTCGC CAACCGCGTC
AAGACTCACC TGATCGACCG CCACAACCGC GAGGATTTCA CCATCGTCAC GCAGGAAGAG
ATGCTGAAAA CCCTGTCCAA TATCCTCAAC GTGCTGACCA TGGCCGTCGG CGCGCTCGGC
GGTATTTCGC TACTGGTCGG CGGCGTCGGC ATCGTCACCA TCATGACCAT CGCCGTGACC
GAGCGCACCG GTGAAATCGG CCTGCTGGTC GCCCTCGGTG CCCCCCGACG CACCATCCTC
GCCCTTTTCC TTGGGGAAGC CGTCGCCCTG TCGGCGCTTG GTGGCATTTT TGGTCTGGCG
CTTGGTTTCG GCCTGGCCCA GCTCATCCAT TTTGCGCTCC CCGCGCTGCC GGTCCACACC
CCGCTCAGCT TCGTCCTGCT CGCCGAAGGC ATCGCCATCA CCATCGGCCT CGCCGCTGGC
GTGCTACCCG CCCGCAACGC TGCCCGTCTC AATCCCGTCG AGGCCTTGCG CACCGAGTAA
|
|---|
| Protein sequence | MLWSDAFQLA LRAITAQRLR SFLTLLGIAV GIAAVILLTS IGEGIHRFVL GEFTQFGTNV
ITVAPGKTKT GGSPSGLPSS ARPLSLDDAK SIERLPHVVA VTPNVRGNAE VEGNGRTRRT
LIYGVNSKLP LIFRSTVQSG QFLPADDEGS ARPFVVLGSK LKNELFGSEN PLGQRLRISG
LHFRVIGVLA PKGQFLGIDL DDTAFVPTAR AQELFNREGV DEINIAAEEG IPSAIVANRV
KTHLIDRHNR EDFTIVTQEE MLKTLSNILN VLTMAVGALG GISLLVGGVG IVTIMTIAVT
ERTGEIGLLV ALGAPRRTIL ALFLGEAVAL SALGGIFGLA LGFGLAQLIH FALPALPVHT
PLSFVLLAEG IAITIGLAAG VLPARNAARL NPVEALRTE
|
|---|
| |