| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3445 |
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| Symbol | |
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| ID | 3567850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 3693315 |
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| End bp | 3696599 |
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| Gene Length | 3285 bp |
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| Protein Length | 1094 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637681917 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_286644 |
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| Protein GI | 71909057 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATGG CGATGGATAT TCTGGAGGAC AAGCTGTCGC CATCGACCGT CGGCGAGACT
GCCAACGATG TGCTGCGGCA GCAGGCCGTC ATGCTCTACC GCAGCTTCCG GTCGGCGGCG
TTCGGGACTG TCCTGGCCTC GACTTTCCTT GTCTTCGTGC TCTGGCCTCA TTTCAGTCAT
GCCACCCTGT TGGCCTGGCT GATCGGCATG CAGGCGATTG TTGCCGGACG GGCCATCCAG
GCGCACCGAC TGAAGGGGTT TCTGGCATCG GCGCCCGGTC GGGAGCGTCT GCATGCCTGG
ATTCGGCATT TTTCCTATGG TTTGTTGCTG GCGGGCCTGC ATTGGGGGGG AACCGCCTTC
CTGTTCATGT CGCCCGAGAA TGTCAGCGCG GCAATGTTCC TGCTTCTTGT CCTGACCGGT
GTGGCGGCAA GCGCCAGCAT CCTGCACACT TCGCTGCCGG CAACGGCCGT TCCGTTCATC
GCGCTGGTCC TGATTCCTGT TGCCGTGCGC ATGTATGCCT TCGAAAATGT CGGCAGTTAC
GCCAGTGTGG CGGTACTGGG CTTTCTGCTG TTGCTATGGG CGGCGGCTCG GCGTGGTCAT
CGCATGCTCT GGAACAGCAT CGCCGTTGGC CTGGATAACG AACGCCTGCA GCATGCCATC
ATGGCCGACA AATTGGCGGC GGAGGGGGCG CTCCGTGCGG CGGCGCAGGA GTATCAGGAG
GTCTTTGCCC ACATCACCGA TGGCCTGATC CTGATTGATG TTCGTGACGA TGCCAGCTTC
CGGGTTGCCG GTGCGAATGC GGCGATGGCG CAGATCGTCG GCGTTCCTGT CGAGAGCGCC
ATCGGGAAAA CGTTTGGCGA ACTGGTTGAG CCGGAACTCG CGAGCCAGGC CGAGGCTAAT
TACCGGCGCT GCGTCGACTT GGGCGACCCC ATTCATTATG AATCCGAGTT CCGCCGCAGC
GGCGTCGTTC GCCATTTCGA CTCCATGCTG GTGCCGATGA GCGATGGTGC CGGCCGGGTT
TTTCGGGTGA TCGGCATCCA TCGCGACATC ACCGAACGCA AGCAGCTTGA GGTCGCATTG
GCGGCGAGGG AACGTGAATT CCGCACGCTG GTGGAAAATT CCCCCGAGGT GATCATTCGC
TACGATCGCG ATCTGCGGCG GGTTTTCAGC AATCCGGCAT TCGATCAACT GCTCGGAGTT
TTGCCGGGTG AAACGCGAGG CAAAGAGGTG TCCTGTTGCT GGGCGCCACG CAACATCAGT
GTCGATGAGT TCGAGGCGAT CCTGCAGCGG GTGTTTGCTA GCTGTCGCCC GGAGGAGTGC
CTTCTCGAGT TCAGGGACGA GCGCGGCAGC CTGGTCTGCC TGAACTATCG GCTGGTTCCG
GAGTTCGGCC TGGATGGCCA GGTTGAGAGC GTCCTCGGAT TCGGGCACAA CGTCAGCGCG
CTCAAGCGCC AGGAGGCGTT GGGGCGGGCC AAGGTCCATA TCCTCGAACG TCTCGGGCAG
GGGGCGGAAT TGTCGGAGGT GCTTGAGTTG GTGACGGCGC TTCTGGAGCA GGAAAGTCCT
GGCTACCTGT GCAGCATCAT GCTGCTCGAC GAGGCCGGTG AACGCTTGCA CATTGCCGCT
GCGGCGAGCT TGCCGGAAAA ATACTGCCGG GCGATCGAGG GGGTCAGGAT CGGCGACGGT
ATAGGTTCCT GTGGTACCGC CGCCTGGTCG GGCAAGGAGG TGTTTGTCGA GAACATCGCC
ACGCACCCCT ATTGGGCGTC ATATCGTGAC TTGCCCCTGA AGTGCGGGCT ACGGGCCTGC
TGGTCCTTTC CGATTGCCGA TTCTGGCGGC AAAGTGCTGG GGGTTTTCGG CATCTATCGG
CGCGAGCCGG GCCTGCCTAG TGAGGCCGAG CTGGAGTCGA TCCGGCAGGC GCACCACCTC
GCCATGGTCG CCATCGAGCG CAATCGCATC GAGGCAAAGT TGAAATACCA GGCCAGCTTC
GATGCGCTGA CCGGACTGCC CAACCGCAGC CTGTTCTATA TCCGCTTGCG TGACGAAATG
CTCAGGGCTG CCCGAACGGG GCATGGCGGT GCTCTGCTTT TCATCGATCT GGATCGCTTC
AAGGAGGTTA ACGATTCGCT CGGACACGAG TCTGGCGACA GTCTTCTGGT CGAAGCGGCG
GAAAGAATCC GCGCCCAGGT GCGAGCTTCC GATTTGGTGG CTCGCCTGGG GGGCGACGAA
TTTGTCGTGG TTTTGCCTGA CGTCCGTGCC CCCGAGCATC TTGGCCTTCT GGCCCAGGCG
ATTGTTGATG CGCTGGTCGT CCCCTTCGTG CTGGATGGTC ATCAGGCCTA CGTTTCAGCC
AGCGTTGGGA TCGCCTGCTA TCCGCAGGAT GCTGAAGATG CCGATATCCT GCTCAGCTGT
GCCGATAAGG CCATGTATGT GGCCAAGGAG CTGGGACGTA ACGGTTTCTG CTTCTTCACC
GAATCGATGC AGACATCCGC CGACTATCGC TTGAAGCTCT CCCACGATTT ACGCAGTGCG
CTGGCGGACG GGCAATTGTT ACTCCACTAT CAGCCGATCG TCGAAGTCGA AAGTGGCCGG
GTCGTCAAGG CCGAGGCGCT GCTGCGCTGG CGTCATCCGC AGCGTGGCAT GGTGCCGCCG
GACCAGTTCA TCCACCTGGC CGAGGAAACC GGCCTGATTC ATGCCATCGG TGATTGGGTG
TTCCAGCAGG CTGCACTGAC CGCGCGCGAC TGGGCGGCCC GGATGCCGGC CGGGGCGGCC
GACTGCCAGA TCAGCGTCAA CATGTCGCCA CGCCAGTTCG TCAAGGATGG CAGCGAGGCA
GGATGGCTGG ACTATCTGAA ATCGATCGGG CTTGATCCTC GTTACATCGG GCTGGAGATC
ACCGAGGGCT TGCTGCTCGA TGAGCGATTG CATGTCGCCG AACGCCTTGC CGCCTTCCGC
GCCAGCGGCA TCCAGATTTC CCTGGATGAT TTCGGGACAG GGTATTCCGC CATGGCTTAC
CTGAAGAAGT ATCCGATCGA TTACCTGAAG ATAGACCGCA CGTTTGTCCG TGACCTAGTT
TCAGATTCCG GTGATCGGGC CATCGCCCAG GCGATGATTT TCATGGCCAG CCAATTGGGC
CTGAAGACCG TGGCCGAAGG GGTGGAAACG GCCGAACAAC GCGATCTGCT GCAGTCATTC
GGCTGCGACC TGATTCAGGG CTACTACTAT GCTCGTCCGT TGCCACGCGA CGAATTCATG
GCCTATCTGG AACAGGCCAA TGTCCTGAGC CTTCCGGTGG CTTAG
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| Protein sequence | MAMAMDILED KLSPSTVGET ANDVLRQQAV MLYRSFRSAA FGTVLASTFL VFVLWPHFSH
ATLLAWLIGM QAIVAGRAIQ AHRLKGFLAS APGRERLHAW IRHFSYGLLL AGLHWGGTAF
LFMSPENVSA AMFLLLVLTG VAASASILHT SLPATAVPFI ALVLIPVAVR MYAFENVGSY
ASVAVLGFLL LLWAAARRGH RMLWNSIAVG LDNERLQHAI MADKLAAEGA LRAAAQEYQE
VFAHITDGLI LIDVRDDASF RVAGANAAMA QIVGVPVESA IGKTFGELVE PELASQAEAN
YRRCVDLGDP IHYESEFRRS GVVRHFDSML VPMSDGAGRV FRVIGIHRDI TERKQLEVAL
AAREREFRTL VENSPEVIIR YDRDLRRVFS NPAFDQLLGV LPGETRGKEV SCCWAPRNIS
VDEFEAILQR VFASCRPEEC LLEFRDERGS LVCLNYRLVP EFGLDGQVES VLGFGHNVSA
LKRQEALGRA KVHILERLGQ GAELSEVLEL VTALLEQESP GYLCSIMLLD EAGERLHIAA
AASLPEKYCR AIEGVRIGDG IGSCGTAAWS GKEVFVENIA THPYWASYRD LPLKCGLRAC
WSFPIADSGG KVLGVFGIYR REPGLPSEAE LESIRQAHHL AMVAIERNRI EAKLKYQASF
DALTGLPNRS LFYIRLRDEM LRAARTGHGG ALLFIDLDRF KEVNDSLGHE SGDSLLVEAA
ERIRAQVRAS DLVARLGGDE FVVVLPDVRA PEHLGLLAQA IVDALVVPFV LDGHQAYVSA
SVGIACYPQD AEDADILLSC ADKAMYVAKE LGRNGFCFFT ESMQTSADYR LKLSHDLRSA
LADGQLLLHY QPIVEVESGR VVKAEALLRW RHPQRGMVPP DQFIHLAEET GLIHAIGDWV
FQQAALTARD WAARMPAGAA DCQISVNMSP RQFVKDGSEA GWLDYLKSIG LDPRYIGLEI
TEGLLLDERL HVAERLAAFR ASGIQISLDD FGTGYSAMAY LKKYPIDYLK IDRTFVRDLV
SDSGDRAIAQ AMIFMASQLG LKTVAEGVET AEQRDLLQSF GCDLIQGYYY ARPLPRDEFM
AYLEQANVLS LPVA
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