Gene Daro_3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3407 
Symbol 
ID3568669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp3658279 
End bp3659985 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content62% 
IMG OID637681879 
Producttype II secretion system protein E 
Protein accessionYP_286606 
Protein GI71909019 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTA CCGCCCTCCA GCGCCGCCCC CTCGGCCAGA TCCTGATCTC CGAAGGTATC 
CTGTCGGAAG ATCAACTGCG CATCGCGCTG CTGGAGCAGA TGAAGCAAAA CCAGCCAATC
GGCAAATTGC TGGTTTCGCT GGGTTTTGTG ACTGAAGCCA CCTTGCGGCA GGCGCTGTCG
GAAAATCTCG GCAAGCAGAG CATTGACCTG TCGCACGCCG TGATCGACCC GCAGGCGCTG
AAACTGGTGC CGCGCGACTT GGCCAAGCGT CACCACCTTC TGCCGCTGGA TTACGACCGG
ACCAACCGCC GACTGGCGCT GGCCATCTCG GATATCAACG ACATCGTCGG CCTGGACCGC
GTGCGCTCCC AACTGGAGGA AGGCACCGAA ATCGAGACGC TGCTCGCCGG TGAATCGGAA
ATCGACCACG CCATCGACCA GTATTACGGT CACGAATTGT CGATCGACGG CATCCTGCAC
GAGATCGAAA CTGGCGAGAT CGACTGGCAC AGTCTTTCAG CCACCGACAA TGAATACAGC
CAGCCAGTCG TCCGCCTGAT CGATTCGATC CTGACCGATG CCGTCAAACG CGAGGCTTCG
GACATCCACT TCGAGCCGGA AGCCAACTTC CTGCGCATCC GTTACCGCAT CGACGGCATG
CTGCGCCAGA TCCGCGCCCT GCATAAGTCC TATTGGCCGG CGATGACGGT CCGCATCAAG
GTGCTGTCCG GCATGAACAT TGCCGAAATG CGCGCCCCGC AGGATGGCCG GATCAGCCTG
ACGGTTTCCG GGCGCCCGAT TGATTTTCGC GTCGCCAGCC AGCCGACCAT CCACGGCGAG
AACATCGTGC TGCGCATTCT CGACCGCCAG AAGGGCATCG TGCCACTGGA GGGACTCGGC
TTGGCCGAGG AGCATCTGCA CCAGTTGAAG CTGATGATTT CCCGGCCCGA AGGCATCATC
CTCGTCACCG GCCCGACCGG CAGCGGCAAG ACGACGACGC TTTACTCGGT GCTGAACCAC
ATCAACGCCG AGGGCATTCA CATCATGACC CTCGAAGACC CGGTCGAGTA TCCGATGGCG
ATGGTGCGCC AGACCTCGGT CTCCGAAACT GCCAAGCTCG ATTTTGCCAA CGGCATCCGC
TCGATGATGC GACAGGATCC GGACGTCATT CTGGTCGGTG AAGTACGCGA TTCTGAAACG
GCAGAAATGG CTTTCCGCGC CGCGATGACA GGCCATCAGG TGTACACGAC CCTGCACACC
AACTCGGCCA TCGGCGCCGT GCCGCGCCTG CTCGACATTG GCGTACTGCC CGACATCATG
GCCGGCAACA TCATCGGCAT CGTGGCCCAA CGCCTGATCC GCCGCCTGTG CGAGCACTGC
AAGTCGCCCT ACCACGCCGA ACCGCACGAA ATCCGCCTGC TCGGACCACA GGGAGAAGGA
ACGCGTCCCG TGCTATTCCG GCCGACCGGC TGCGAACTGT GCGATTTCCA GGGCTATCGT
GGCCGTCTGG CGATCATGGA ACTGTTGCGC ATCGACGCCG GCATTGACGA TCTGATTGCC
CGTCGCGCCA CCACCCATGA AATCCGTAGC CGCGCCCTGC TCCAGGGTTT CACCACGCTG
GCCGACGATG GCATGCGGCG GGTGCTCAAC GGCACGACCT CGCTCGAAGA ACTCGCCCGT
GTCGTCGACC TAACCGACCG GATGTAA
 
Protein sequence
MSTTALQRRP LGQILISEGI LSEDQLRIAL LEQMKQNQPI GKLLVSLGFV TEATLRQALS 
ENLGKQSIDL SHAVIDPQAL KLVPRDLAKR HHLLPLDYDR TNRRLALAIS DINDIVGLDR
VRSQLEEGTE IETLLAGESE IDHAIDQYYG HELSIDGILH EIETGEIDWH SLSATDNEYS
QPVVRLIDSI LTDAVKREAS DIHFEPEANF LRIRYRIDGM LRQIRALHKS YWPAMTVRIK
VLSGMNIAEM RAPQDGRISL TVSGRPIDFR VASQPTIHGE NIVLRILDRQ KGIVPLEGLG
LAEEHLHQLK LMISRPEGII LVTGPTGSGK TTTLYSVLNH INAEGIHIMT LEDPVEYPMA
MVRQTSVSET AKLDFANGIR SMMRQDPDVI LVGEVRDSET AEMAFRAAMT GHQVYTTLHT
NSAIGAVPRL LDIGVLPDIM AGNIIGIVAQ RLIRRLCEHC KSPYHAEPHE IRLLGPQGEG
TRPVLFRPTG CELCDFQGYR GRLAIMELLR IDAGIDDLIA RRATTHEIRS RALLQGFTTL
ADDGMRRVLN GTTSLEELAR VVDLTDRM