Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3369 |
Symbol | |
ID | 3567237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 3627475 |
End bp | 3629271 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637681841 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_286568 |
Protein GI | 71908981 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3170] Tfp pilus assembly protein FimV |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 55 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGAAAAA CAAAATATAC AGCGAGAAAC AACATGAGAA GCAAACTGAC GAGCATTGTC GCACTGACCG CCGCACTTGC TCCAGGCGTC GGAAACGCCA TCGGATTCGG GGAAATCACG CTTCAGTCAC GTATCGGCGA AGCGCTCCTG GCTGAAGTGC CGATTCTGGC GACCGCAGAA GAACAACCCA TAACGGCCTG CTTTTCCCTG GCATCGATCC GTGGCTCCGA CTTGCCGGTG ATCACTGCAG CCAAGACAAG ATTGATCCGC CGCGGCCAGA ATTATGTCCT GCACATTCTG GGCACCCGAC CGGTCAGCGA ACCCATTTTC GCGATCTCCC TGCAAGCGGG CTGCGGTTAC GACATTGTGC GCGACTACGT GCTGATGCCG GAAGCACCAT TTGCGCAGGC AGAAATCCCT GCGTCTTCAG GCGCCATTGC CGCGCCAAGA GGTAAACAGC CGAAATTTGC GGAATGGCAT GCCCGCGAGG GCGACACGCT CGAGGACATT GCCGACGCCC AGGCGCCAGC CACTCTTTCC GAACGTCAGC GCCTGATTGC CGCCTTAAAA CGAGCCAATC CGGACCTCGC CCCAGACACC GTACTCAGAG AGGGCTCCAT TGTTCGCATT CCGGCAAGCA AGCAGGTCGG CGCCGAGAAA AGAGAAAGCC CCTCTCGTGC ATCGACGCAA GCGACAAGCT TTGAGGAAAC GTCACCAAAG CCAGTTGTAC CACGCAGCAA GCCCAGGCCA AACACCCCGC CAACGAAAGG CATGGACCAA CTGCTCGTGG GCGCTGCGCC AGAGGAGACC AAGCCGCGCG AAAAAGGAAA TTCTGCGCTC CTGTCATTGG CCGAGACCGA ACAGCGCCTT CTCAAGCTGG AAACCACCCT GCATTTGCTG ACGCAGGAAG TGGAAAAAAT GGATCAAGCC CTGGACTTGG CGACCAAGGC CATTGAAGCA CAAGGCAAAT TGCAGCGGGC GCAGGCGCCC CAGGCTGCTG TAGCGGCGAC CAGTGCCCCC GCGCTGCCTG CCAACGCCCC AGCGAAAGCC AACTGGCTTG AATTGCTGTT GAGTGCAGCC CTCGGCGCGG CCATTTCAGT CGGTCTTGCC CAATACCTGG GACGTCGCCA TCGTTATCCT GGAGAGGAAG AAGCGCCACT GCTCTTCGCC CAGCATCGCG ACGCAGCGCG CCCGGCCACA CAAGAAACGA CGGACGTATT CGACATCACA GAAAGCGAAA CATCTGACTC AAGCCCGCAA GTCATCAAGC CATCCCTGCC GCCATCGCCT GAAGAAAGCC CAGTCTCAGC CAGTGCCCCC AACCCGGACG AAATGCAGGT GGAAGACGAT CACTCGCTGC TGGAACTGGC GGAAATCATG CTCTCCTTTG GGCGCCTGCG TGGCGCAGCC GACACACTGG CTGCTCACAT TGACGAGACG CTACCCAGGA GTATTGAGCC ATGGAGCATG TTGCTCGACC TCTACCGCCG AGGCGGCATG CGCCAGGAGT TTGACGCACT GGCGGAAAAG ATGCGCCGCC ACTTCAATAC CGAGATCCCA GCCTGGAATG ACTCGACGAC GCCCATCTCC GGACTGAAAA CACTGGAAGA CTTCCCGCAC GTCATTCAAA AGGCATCCCA ACTCTGGGGC ACCCAAGACA GCGTCGATTA TTTATTCAGT CTCGTCCACG ACACCCGAAT GGGTCAGCGC AATGGCTTCC CTTTGGAAGT CGTAGAGGAA ATCGCCTTGC TCATGCGTAT TCTGGTGGAG GCCTACGGTC TCAAACGCTG CGGCTAA
|
Protein sequence | MGKTKYTARN NMRSKLTSIV ALTAALAPGV GNAIGFGEIT LQSRIGEALL AEVPILATAE EQPITACFSL ASIRGSDLPV ITAAKTRLIR RGQNYVLHIL GTRPVSEPIF AISLQAGCGY DIVRDYVLMP EAPFAQAEIP ASSGAIAAPR GKQPKFAEWH AREGDTLEDI ADAQAPATLS ERQRLIAALK RANPDLAPDT VLREGSIVRI PASKQVGAEK RESPSRASTQ ATSFEETSPK PVVPRSKPRP NTPPTKGMDQ LLVGAAPEET KPREKGNSAL LSLAETEQRL LKLETTLHLL TQEVEKMDQA LDLATKAIEA QGKLQRAQAP QAAVAATSAP ALPANAPAKA NWLELLLSAA LGAAISVGLA QYLGRRHRYP GEEEAPLLFA QHRDAARPAT QETTDVFDIT ESETSDSSPQ VIKPSLPPSP EESPVSASAP NPDEMQVEDD HSLLELAEIM LSFGRLRGAA DTLAAHIDET LPRSIEPWSM LLDLYRRGGM RQEFDALAEK MRRHFNTEIP AWNDSTTPIS GLKTLEDFPH VIQKASQLWG TQDSVDYLFS LVHDTRMGQR NGFPLEVVEE IALLMRILVE AYGLKRCG
|
| |