Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3341 |
Symbol | |
ID | 3568296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 3594972 |
End bp | 3596939 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637681813 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_286540 |
Protein GI | 71908953 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0053874 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTATCCGG AAAGTAATAT TTTGACGCAA AGTCCGGCCG TAGCCGGCCG AAAGTTCGTG TTGTTCGCCA TGGGGGCGGT TGTCCTGGTC TGGTGCCTGA TTGGCCTCGA TCTGTGGATT GCCAGTCGCC ATGCTGCGGC GAAGATTTCG TTTCTGCCAG GCGAGACTAC GCCCTCCGAG TTGCCGACGT GGAAGCTTTT TTTGCTGGTC CTGAGCGTGC TTCTCACCGC GCTGGTCGTC CAGGCTTACC GTCAACTGCT CGCAACAAAA CGCCAGGTGG AAGCCGGGCT GGCCCTGCAA CGGCTGATCG TCGACCACGC GTCTGAAGCC ATGATGCTCA CCGACAGCGC CCAACGCATT CTCTCGGTGA ATTCGGCCTT TGAGCAGATT ACCGGCTACG CCGGCAAGGA TGTTTTTGGC AAGACGCCAA CCATGCTCAG TGCGGGGCAT CAGGGTCTGG CCTCTCACCG GAATGTCTGG GATTTTGTGG CCGAGAACGG TTCCTGGGAA GGTGAAATCT GGGATCGCCG GAAGGATGGC ACGATCTATC CGAAGCAGAT GCGCATCACG GCCATCTGCG AGGATGGTGT GCAGCTCTCG CATTTCGTCG CCGTCTTTTC CGATATCAGC GAAAGTCGGG CGCAGGCGGA GCGCCTGGAG TATCTGGCTC GTCATGATCC GCTGACCAAT CTGCCGAATC GGCTGGCGCT CGATGCGCAT CTCGATACCC TGCTGGAGGG GGCGACCCCG GGGATCAACC GCCTGGCGCT GTTGATCATC GATCTGGATA ATTTCAAGAC GATCAACGAC TCGCTTGGCC ATCATGCCGG TGACCGACTA CTGAGTGAGT TGGCTCGCCG GCTGGGGGCG CAGATGGACC TGACGAAGCG CCTTTTTCGC CTGGGTGGGG ACGAGTTTGT CGTCGTTGTC GATCAACTGA TCAATGAAGA GGCGGTGATC GAACTGGTCC AGCAGCTGGC CGGGGGCATC GGTGACCCGT GCAACATCGA TGGACATGTA TTGCACTGCA CATCATCGAT TGGCATCAGC CTGTATCCGG AAGATGGCCG GGATGCCCAG GCGCTGATCC GGAATGCCGA TACGGCCATG TACTACGCCA AGGCCAATGG TCGTAACAAC CACAAGTTCT TCACCGAGCC GATGAATGCC GCGGCCAATA AACGCCTGCA TCTCGAAAGC GAACTGTGGT GCGCGCTGGC CGAAAACCAA CTGGTGCTGT ATTACCAGCC GCAAATCGAT CTGCTCAGCG GCAAGGTTGT CGGTGTTGAA GCCCTGGTTC GCTGGCGACA CCCGTTGCGC GGACTGATTC CGCCGGCCGA ATTTATCCCG GTGGCCGAAG AATGTGGTCT GATCCTGCCG CTCGGTCACT GGGTCTTGCT GACGGCCTGC CGGCAGGCCA GGGAATGGCT TGATGCCGGT ATCGACATGG GGGAAATGGC CGTCAATATT TCGGCCCATC AGTTCCGGCA GCCCGAATTT ATCTCGTCGG TCCAGGCCAT TCTGGCTGAA ACGGGCCTGC CCACCGGGCG CCTGGAATTG GAAATCACCG AAAGCACGAT CATGCACGAG GTCGATGCGG CGATCCAGAC GCTGGCCCAA CTTCGGGCCA TGGGTATCAA GCTGGCCATC GACGATTTTG GCACCGGCTA TTCGTCCTTG GCCTACCTGC GCCGTTTCCC GCTTGATCGC CTGAAAATTG ATCGCTCATT CCTGGCCGAT GTCGAAACCG ATCCGGATGC TGCCTCGCTG GTCACTTCGA TCGTGCTGCT TGGCCGCTCG CTGGGCTTGC AACTGGTGGC CGAGGGGGTT GAAAACTTCG CCCAGGCCGA ATTCCTCCGT ACCCTGGAGT GCGAACGGGT GCAGGGCTTC CATTTCTATC AGCCGGTTTG TGCGGAAGAG GTCGTTGGCG TCGGCCGTTT TCTGGAAAAT ACTGCCCTGC AGACCTGA
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Protein sequence | MYPESNILTQ SPAVAGRKFV LFAMGAVVLV WCLIGLDLWI ASRHAAAKIS FLPGETTPSE LPTWKLFLLV LSVLLTALVV QAYRQLLATK RQVEAGLALQ RLIVDHASEA MMLTDSAQRI LSVNSAFEQI TGYAGKDVFG KTPTMLSAGH QGLASHRNVW DFVAENGSWE GEIWDRRKDG TIYPKQMRIT AICEDGVQLS HFVAVFSDIS ESRAQAERLE YLARHDPLTN LPNRLALDAH LDTLLEGATP GINRLALLII DLDNFKTIND SLGHHAGDRL LSELARRLGA QMDLTKRLFR LGGDEFVVVV DQLINEEAVI ELVQQLAGGI GDPCNIDGHV LHCTSSIGIS LYPEDGRDAQ ALIRNADTAM YYAKANGRNN HKFFTEPMNA AANKRLHLES ELWCALAENQ LVLYYQPQID LLSGKVVGVE ALVRWRHPLR GLIPPAEFIP VAEECGLILP LGHWVLLTAC RQAREWLDAG IDMGEMAVNI SAHQFRQPEF ISSVQAILAE TGLPTGRLEL EITESTIMHE VDAAIQTLAQ LRAMGIKLAI DDFGTGYSSL AYLRRFPLDR LKIDRSFLAD VETDPDAASL VTSIVLLGRS LGLQLVAEGV ENFAQAEFLR TLECERVQGF HFYQPVCAEE VVGVGRFLEN TALQT
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