Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3280 |
Symbol | secD |
ID | 3566107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 3530650 |
End bp | 3532527 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637681753 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_286480 |
Protein GI | 71908893 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 0.527735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGCT ACCCTCTCTG GAAGTACATC ACCATCGCTA TCGCGCTGGT CATGGGCTTC GTCTACACCC TGCCCAATTT CTTCGGCGAA TCACCGGCCG TGCAGGTTTC CAGCGCCAAG GCCACGATCA AGGTCGATGA AAAGGCCAAG GCCCGTGTCG AAGATTCCCT GAAGGCCGCC GGCATCACGC ACGATGGCAT CCAGCTCGAC TTCAACGGCG TCAAGACCCG TTTCAAGGAT ACCGACACCC AGCTGAAGGC CAAGGATGCA CTGGAAAAGG CCTTCAACCC GGACGCAGCC GATCCGCAGT ACGTCGTTGC CCTTAACCTG CTGGCCGCCT CGCCGCAATG GCTGACCTCG CTGCACGCGC TGCCGATGTA CCTCGGCCTC GACCTGCGCG GCGGTGTGCA CTTCCTGCTG CAGGTAGACA TGAAGGGGGC GTTGACCAAG CGCCTCGATT CGACCTCGGC CGACCTGCGC ACCGTGATGC GCGACAAGAA TCTGCGCCAC GGCGGCGTAA ACCGCGAAGG CGAGCGCATC ATCATCAAGT TCCGCGATGC CGAAACGCAA AACAAGGCCC GCATCGCCAT TTCCGACAGC CAGCCCGACC TGCTGCTGAC CGATGCTGGC GATGCCGCCG AGCCGCGCCT GATCGCCACG CTGAAGCCGC AAGCCCAGCA GAAGATCGGC GAATTTGCGC TGAAGCAGAA CATCACCACG CTGCACAACC GGATCAACGA ACTCGGCGTC GCCGAACCGG TGATCCAGCA ACAAGGCGCC GACCGCATCG TCGTCCAGTT GCCTGGCGTG CAGGACACGG CCAAGGCCAA GGACATTCTG GGTCGTACCG CGACCCTGGA AATCCGCATG GTCGACGACT CGACAGGCGC GCTCGACGCC GCGCTGGCCG GCAATCCGCC GTTCGGTACC GAGGTCTACA ACGAGCGCGG CGGCCAGCCG CTGCTGGTCA AGAAGCAGGT GGTGCTGACC GGCGACCGCC TGACCGATGC CCAACCCGGC TTCGACAACC AGACCCAGGA GGCTGCGGTC CACCTGACGC TCGACGCCGC CGGCGCCCGC ATTTTCAAGG ACATCACCCG CGAAAACGTC GGCAAGCGCA TGGCCATCCT GCTCATCGAA AAGGGCAAGG GCGAAGTAGT GACCGCGCCG GTCATCCGTA CCGAAATCGG TGGCGGCCGC GTGCAGATTT CCGGCCGCAT GACCACCACG GAAGCCAACG ATACCGCCCT GCTGTTGCGT GCCGGCTCGC TGGCCGCCCC GATGGAGATC ATCGAGGAAC GCACCATCGG CCCATCCCTG GGTGCCGAAA ACATCCAGAA GGGCTTCCAT TCGACGATGT GGGGCTTTGC CGCGATCGCC GTGTTCATGA TCATCTACTA CCAGATGTTC GGTGTCGTTT CGGTGCTGGC GCTGGCTTCC AACCTGCTGT TCCTGGTCGC CATCCTGTCG CTGCTGCAGG CGACGCTGAC CCTGCCCGGC ATCGCGGCTA TCGCGCTAAC CCTCGGCATG GCCATCGACG CCAACGTGCT GATCAACGAA CGGGTGCGCG AAGAGCTCCG GGCCGGCATG CCACCGCAGG CCGCCATCTC GGAAGGTTAC GAACGTGCTT TCGGGACCAT TCTCGACTCC AACATCACCA CGCTGATCGC CGGCCTCGCC CTGTTGATCT TTGGTTCCGG CCCGGTTCGC GGCTTTGCCG TGGTGCATTG CCTGGGCATC CTGACCTCGA TCTTCTCGTC CGTCGTCGTC TCGCGCGGCC TGGTCAACCT GATCTACGGT CGCCAGAAGA AACTGACCAA GGTCGCTATC GGCCAGCTCT GGAAACCGGG CGCCACGACG GCCGCCGGCC AGAAATAA
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Protein sequence | MNRYPLWKYI TIAIALVMGF VYTLPNFFGE SPAVQVSSAK ATIKVDEKAK ARVEDSLKAA GITHDGIQLD FNGVKTRFKD TDTQLKAKDA LEKAFNPDAA DPQYVVALNL LAASPQWLTS LHALPMYLGL DLRGGVHFLL QVDMKGALTK RLDSTSADLR TVMRDKNLRH GGVNREGERI IIKFRDAETQ NKARIAISDS QPDLLLTDAG DAAEPRLIAT LKPQAQQKIG EFALKQNITT LHNRINELGV AEPVIQQQGA DRIVVQLPGV QDTAKAKDIL GRTATLEIRM VDDSTGALDA ALAGNPPFGT EVYNERGGQP LLVKKQVVLT GDRLTDAQPG FDNQTQEAAV HLTLDAAGAR IFKDITRENV GKRMAILLIE KGKGEVVTAP VIRTEIGGGR VQISGRMTTT EANDTALLLR AGSLAAPMEI IEERTIGPSL GAENIQKGFH STMWGFAAIA VFMIIYYQMF GVVSVLALAS NLLFLVAILS LLQATLTLPG IAAIALTLGM AIDANVLINE RVREELRAGM PPQAAISEGY ERAFGTILDS NITTLIAGLA LLIFGSGPVR GFAVVHCLGI LTSIFSSVVV SRGLVNLIYG RQKKLTKVAI GQLWKPGATT AAGQK
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