Gene Daro_3280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3280 
SymbolsecD 
ID3566107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp3530650 
End bp3532527 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content63% 
IMG OID637681753 
Productpreprotein translocase subunit SecD 
Protein accessionYP_286480 
Protein GI71908893 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value0.527735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGCT ACCCTCTCTG GAAGTACATC ACCATCGCTA TCGCGCTGGT CATGGGCTTC 
GTCTACACCC TGCCCAATTT CTTCGGCGAA TCACCGGCCG TGCAGGTTTC CAGCGCCAAG
GCCACGATCA AGGTCGATGA AAAGGCCAAG GCCCGTGTCG AAGATTCCCT GAAGGCCGCC
GGCATCACGC ACGATGGCAT CCAGCTCGAC TTCAACGGCG TCAAGACCCG TTTCAAGGAT
ACCGACACCC AGCTGAAGGC CAAGGATGCA CTGGAAAAGG CCTTCAACCC GGACGCAGCC
GATCCGCAGT ACGTCGTTGC CCTTAACCTG CTGGCCGCCT CGCCGCAATG GCTGACCTCG
CTGCACGCGC TGCCGATGTA CCTCGGCCTC GACCTGCGCG GCGGTGTGCA CTTCCTGCTG
CAGGTAGACA TGAAGGGGGC GTTGACCAAG CGCCTCGATT CGACCTCGGC CGACCTGCGC
ACCGTGATGC GCGACAAGAA TCTGCGCCAC GGCGGCGTAA ACCGCGAAGG CGAGCGCATC
ATCATCAAGT TCCGCGATGC CGAAACGCAA AACAAGGCCC GCATCGCCAT TTCCGACAGC
CAGCCCGACC TGCTGCTGAC CGATGCTGGC GATGCCGCCG AGCCGCGCCT GATCGCCACG
CTGAAGCCGC AAGCCCAGCA GAAGATCGGC GAATTTGCGC TGAAGCAGAA CATCACCACG
CTGCACAACC GGATCAACGA ACTCGGCGTC GCCGAACCGG TGATCCAGCA ACAAGGCGCC
GACCGCATCG TCGTCCAGTT GCCTGGCGTG CAGGACACGG CCAAGGCCAA GGACATTCTG
GGTCGTACCG CGACCCTGGA AATCCGCATG GTCGACGACT CGACAGGCGC GCTCGACGCC
GCGCTGGCCG GCAATCCGCC GTTCGGTACC GAGGTCTACA ACGAGCGCGG CGGCCAGCCG
CTGCTGGTCA AGAAGCAGGT GGTGCTGACC GGCGACCGCC TGACCGATGC CCAACCCGGC
TTCGACAACC AGACCCAGGA GGCTGCGGTC CACCTGACGC TCGACGCCGC CGGCGCCCGC
ATTTTCAAGG ACATCACCCG CGAAAACGTC GGCAAGCGCA TGGCCATCCT GCTCATCGAA
AAGGGCAAGG GCGAAGTAGT GACCGCGCCG GTCATCCGTA CCGAAATCGG TGGCGGCCGC
GTGCAGATTT CCGGCCGCAT GACCACCACG GAAGCCAACG ATACCGCCCT GCTGTTGCGT
GCCGGCTCGC TGGCCGCCCC GATGGAGATC ATCGAGGAAC GCACCATCGG CCCATCCCTG
GGTGCCGAAA ACATCCAGAA GGGCTTCCAT TCGACGATGT GGGGCTTTGC CGCGATCGCC
GTGTTCATGA TCATCTACTA CCAGATGTTC GGTGTCGTTT CGGTGCTGGC GCTGGCTTCC
AACCTGCTGT TCCTGGTCGC CATCCTGTCG CTGCTGCAGG CGACGCTGAC CCTGCCCGGC
ATCGCGGCTA TCGCGCTAAC CCTCGGCATG GCCATCGACG CCAACGTGCT GATCAACGAA
CGGGTGCGCG AAGAGCTCCG GGCCGGCATG CCACCGCAGG CCGCCATCTC GGAAGGTTAC
GAACGTGCTT TCGGGACCAT TCTCGACTCC AACATCACCA CGCTGATCGC CGGCCTCGCC
CTGTTGATCT TTGGTTCCGG CCCGGTTCGC GGCTTTGCCG TGGTGCATTG CCTGGGCATC
CTGACCTCGA TCTTCTCGTC CGTCGTCGTC TCGCGCGGCC TGGTCAACCT GATCTACGGT
CGCCAGAAGA AACTGACCAA GGTCGCTATC GGCCAGCTCT GGAAACCGGG CGCCACGACG
GCCGCCGGCC AGAAATAA
 
Protein sequence
MNRYPLWKYI TIAIALVMGF VYTLPNFFGE SPAVQVSSAK ATIKVDEKAK ARVEDSLKAA 
GITHDGIQLD FNGVKTRFKD TDTQLKAKDA LEKAFNPDAA DPQYVVALNL LAASPQWLTS
LHALPMYLGL DLRGGVHFLL QVDMKGALTK RLDSTSADLR TVMRDKNLRH GGVNREGERI
IIKFRDAETQ NKARIAISDS QPDLLLTDAG DAAEPRLIAT LKPQAQQKIG EFALKQNITT
LHNRINELGV AEPVIQQQGA DRIVVQLPGV QDTAKAKDIL GRTATLEIRM VDDSTGALDA
ALAGNPPFGT EVYNERGGQP LLVKKQVVLT GDRLTDAQPG FDNQTQEAAV HLTLDAAGAR
IFKDITRENV GKRMAILLIE KGKGEVVTAP VIRTEIGGGR VQISGRMTTT EANDTALLLR
AGSLAAPMEI IEERTIGPSL GAENIQKGFH STMWGFAAIA VFMIIYYQMF GVVSVLALAS
NLLFLVAILS LLQATLTLPG IAAIALTLGM AIDANVLINE RVREELRAGM PPQAAISEGY
ERAFGTILDS NITTLIAGLA LLIFGSGPVR GFAVVHCLGI LTSIFSSVVV SRGLVNLIYG
RQKKLTKVAI GQLWKPGATT AAGQK