Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3248 |
Symbol | |
ID | 3566386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 3498275 |
End bp | 3499111 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637681719 |
Product | protocatechuate 4,5-dioxygenase subunit beta |
Protein accession | YP_286448 |
Protein GI | 71908861 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.000000000626478 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGGAAAAA TTGTAGGCGG CTTTTTGGTG CCGCATGACC CGGTCATGTT CGTGATTCCT GATGCGCCGG CGCCCGATGT GGCAAAGCGC ATGTGGAGCG CGTTCGAAAC CTGTGCCGAA CGCCTGGCTG CGTTGAATGC AACCAGCGTC GTAATCATCG GGGCCGACCA CTATTTCAAT TTTGGCACCG GCTGCCTGCC GCAGTACCTG ATCGGCACCG GTGACGTCGA TGGTCCGCTC GATGTCCTGC CCGGCCTGAA GCGCCAGGTC ATTCCGGCCA GCGAAAAACT GGCGAGTTTC ATTGCCGAGC ATGGTCACGA CAACGGTTTC GACTGGGCGG TAGCACGTGC CTTCACGGTC GATCATGCCG TGGCCATTCC GGATCGCCTG ATTGTCGATC CGGTACGCGC CAAGGGGCAG GCTATCGGCA CCATTCCAGT CTATATCGCG GCCGGCGTCG ATCCGTTCAT CAAGATGAAG CGGGCCATCG AACTCGGTGG CGCCATCAAG GCGGCTGTCG AGGCCATGCC CGATGACGAG CGCGTGGTCG TGATCGGCAG CGGCGGCATC AGCCACTGGG TGGGTACGCC CGAGATGGGC AAGGTCAACG AGGCTTTCGA CCACGAAATC ATGGGCTATG CCTGTGCCGG TGATCTGGCA GCCATGCAGG CATTGAGCGA CGACTACATC CTCGAAAACG GTGGCAACGG TGGCATGGAA ATCCGCCAGT GGGCCGTGGC GATGGGCGCG ATGCCCGGCG CCAAGGGCGA AATCATCGAC TACGCCCCGG TCAGGGAATG GGTGACCGGT CTGGGCTTCG TCCAATTGTT TGCTTGA
|
Protein sequence | MGKIVGGFLV PHDPVMFVIP DAPAPDVAKR MWSAFETCAE RLAALNATSV VIIGADHYFN FGTGCLPQYL IGTGDVDGPL DVLPGLKRQV IPASEKLASF IAEHGHDNGF DWAVARAFTV DHAVAIPDRL IVDPVRAKGQ AIGTIPVYIA AGVDPFIKMK RAIELGGAIK AAVEAMPDDE RVVVIGSGGI SHWVGTPEMG KVNEAFDHEI MGYACAGDLA AMQALSDDYI LENGGNGGME IRQWAVAMGA MPGAKGEIID YAPVREWVTG LGFVQLFA
|
| |