Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3150 |
Symbol | |
ID | 3568391 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 3388543 |
End bp | 3389145 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637681621 |
Product | RNA polymerase sigma factor |
Protein accession | YP_286350 |
Protein GI | 71908763 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02943] RNA polymerase sigma-70 factor, TIGR02943 family |
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Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 0.117727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCCG GCCAGCAACC TCATCGAGTG GACACGCCCT TGGACCCCCT GCACGACCCC GAGTTTCTCA CAGACCTGCG TCGCGACATG CTGCGCTTTG CCGAGATGCA ACTGCGCAAT CGGGCACAAG CCGAAGACGC AGTTCAGGAG GCGCTGACCG GCGCCCTGCT GGGGCGGGAA AGCTTTGCCT CGCGGGCTTC CTTACGCACC TGGGTGCTCT CCATCCTAAA GAACAAGATC ATCGATGTGC TGCGGGCCAA GGTTCGCGAA AATGTGGTCG CGGATGTCGA AAATGATGAC GATCTGAACG CCTATTTCAA TGATCGCCAG CACTGGGCCG AAGATACCCG GCCATCGGAA TGGCAGACGC CGCAGCAGGC GATGGAGAAC AAGCGTTTCT GGGAGGTTTT CGAGGCATGC CTCTACCGCC TGCCGGATGC CAGCGCCCGC ATCTTCACCA TGCGCGAAGT GCTTGGTTTC GATACCGACG AGATCTGCCA GACCCTGGCA ATCACCAGCA ACAACTGCTG GGTTCAGTTG CACCGTGCCC GGCTGGCGCT GCGCGCCTGT CTCGGCGCCA ACTGGTTTGG CGAGGCAGCC TAA
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Protein sequence | MIPGQQPHRV DTPLDPLHDP EFLTDLRRDM LRFAEMQLRN RAQAEDAVQE ALTGALLGRE SFASRASLRT WVLSILKNKI IDVLRAKVRE NVVADVENDD DLNAYFNDRQ HWAEDTRPSE WQTPQQAMEN KRFWEVFEAC LYRLPDASAR IFTMREVLGF DTDEICQTLA ITSNNCWVQL HRARLALRAC LGANWFGEAA
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