Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3099 |
Symbol | |
ID | 3568496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 3339779 |
End bp | 3342895 |
Gene Length | 3117 bp |
Protein Length | 1038 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637681570 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_286299 |
Protein GI | 71908712 |
COG category | [P] Inorganic ion transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.754272 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTCGG CAAAACAGGT CACCCTTGTT ACATTAATTC GACTTTGTAT CGCGTTTGGC CTTTGGCTGT TTCAGCCTGC CTACGCCAGC GACAGCAATA CCGTACGTAT CGGCGTACTG GCGTTCCGCG ACGTTCAGGC CACGGAACAA CAATGGTCTG CGCTGGGCGC TTATCTCACT GAAGCAATCG GTGACCATCG CTTCATCGTC GTACCGATGT ACCTAGATGA TCTCAGTGCG GCGGCAGCGA GCGGAGAAGT CGATTTCGTT CTGACCCAGC CCGAACATTA TGTGCTGCTC CGGGCGCGCC ATGGCTTGGC GGCTGTCACA ACGCTGACGA CCCTCGCCGG AGGGCAGCCG GTTTCAAAAT TTGGTGGCGT CATTTTTACT CGGGCAGACA GAAGCGACAT CAATAGCCTG GCCAACCTGC GCGGCAAGGT GGTGGTGGCC ACACACCCGA ATTCCTTCGG CAGCTACCGA ATCCAGCAAT GGACCCTGTT GCAGGCCGGA CTGAGGCTCC CGGGCGACCT GAAACAGCCG ATTTTCACCG GCCCACCTCA AGACAACGTG ATTGAAATGG TGCTGGATGG CAAGGCCGAT GCCGGGTTCA TCCGTACAGG CCTGATCGAA GCACTGGCAA GTGAAGGGCA CCTGGATCCG AGCCGCTTGA AGCTGATCAA CCCACAGCAG GTGAAAGGCT TCCCCCTGTT GCTCTCCACA GAACTGTTCC CGGAATGGCC ATTCTCGGCG GTTCGTGACG TCCCGGAGCC GCTGATCAAG GCGGTTACGC TGGCCTTGCT GAAAATTCCC CCGGACCATC CGGTAGCGAC CAAAGGCAAG TTTCATGGTT TTTCGCCCCC AGCCGATTAC AGTGGCCTGG AGTCGGTGAT GCTTGAGCTA AGAGCTCACC CGGACCGACT TGAGCATTTC GATGCACAGG ACATCGTCGA TAAATACTCG ACTCAGGTCG TTGGCGGGCT GAGTACGCTA CTGATCCTGA GCATGCTCGC CGTGGCCTAC CTGATCCGCT CAAAGCGCCT GGTCGGCGCG GCTCTGCGCG AACGAGCCAG CCTGCTCGAT AGTTTGGGTG AAGGCGTGTA CGGCATTGAT CAGAATGGTC AGTGCACCTT CATTAATCCG AAAGCACTGG AAATGCTTGG CTGGACAGCG GATGAAGTCA TCGGCTCCGA TCAGCACGCC CGCTTCCACC ATCACCGGCC AGATGGATCG ATCTATCCAA GTGCCGACTG CCCAGTCTAT CAAACCCTGC GCGATGGCCA GCGGCGCCAG GGCGAGGAAT GGTTTTTCAA TAAAGATGGC CGAGGCTTCC CGGTTCAATA TTCAGTCACG CCAATCTCAA GACAAGAAGA CAAGGAAGGT GCCGTTGTCA CTTTCCGTGA CATCTCGGAA GCCCGCAAGG CCGACGAGTT GATGCGCATC GCGGCCATTG CTTTCGAAAC CCAGGAAGCA ATGTTGGTCA CCGATGCCAA GAGCCAGATT CTCAGGGTCA ACCGGGCCTT TACCGAGGTC ACCGGCTACA GCGCTGCCGA GGCCATTGGC CAGACGCCTG CGCTACTGAA ATCCGGTTAT CACGAGGACA GTTTCTATAA GGATCTTTGG ACATCGCTGA AGGAAAACGG CCTCTGGCGT GGCGAGATAT GGAATCGCCG GAAAAATGGC GAAATCTATC CCGAATGGCT GACCATTTCA GCCGTACGTG GACAGCACGG CGAAATCACC CACTTCGTTT CCTCTTTTCT TGACATCACC AAGCGGAAGG AAGCCGAGGA GCAGATTCAG TTCCTGGCAC TGTACGACCC ACTCACCCAT CTTCCCAATC GCCGCCTGCT CAATGAGCGC CTGAGCAAGG CACTGACCTC AAGCGGTCGG CAACGGCGCC ATGCGGCCCT GCTTTTCATC GACCTCGATA ATTTCAAGAT GATCAACGAT TCAATGGGCC ACGACATCGG TGACCTGCTC CTTCGTCAGG TTGCCCTGCG GCTGCGGGAA TCGGTGCGCA GCAACGATAC GGTTTCCCGT CTGGGTGGTG ACGAGTTCGT GATCCTTCTC GAAGAACTAA GCCCGAACAT TCACGATGCC ACCACCCAGA TCGAGCACAT CGCGCAGAAG ATGCTTGACT CGCTGGTGCA GCCTTACAAA TTTGGCGAGT TTTCCCACCA TTGCACCGCC AGCATCGGGG CAATTCCGTT CATGGATGCC ACGGAAACCA TCGAGAGCCT GTTGAAATCT GCGGATATGG CCATGTACAA AGCCAAGGCG GCGGGCAAGA ACAGACTCTT CTTCTTCGAT CCGGCGATGC AGACGGAGGT CGAAGCCCGC GCTGCACTTG AGCGTGACTT GCGGCAAGCA CAGCGTGAAA AGCAGTTTGT TCTCTATCTG CAACCCCAGG TTGACCAATC CGGCCATGTT TCTGGCGCGG AGGCATTGAT TCGCTGGCAG CACCCGACCC ACGGACTGAT CTTGCCGGGC GAATTTACCC ATGTCGCCGA AGAAACACGA CTCATCCTGC CCATCGGCCA ATGGGTTCTG GAGGAAGCTT GCAAACAGCT GGTTATCTGG CAGAAAAATC CTGATACGGC GCATCTGACA CTGGCCATCA ACGTCAGCGC CTTGCAGTTC CGTAACCCGG ATTTTGTCGA TGATGTGGCG CGAGCCATCC ATGAATCAGG CGCCCTGGCC AGCCGCTTGA AACTTGAAAT CACTGAATCA CTATTGCTCG AAGATATTGA CGGCACCATC GAACGCATGC AGGTGCTGAA GAATCAGCTG GGCGTCGGCC TGTCACTTGA CGATTTCGGA ACAGGCTATT CCTCGCTGAG CTACCTGAAA CAGCTGCCGC TTGATCAAAT CAAGATTGAT CGCAGTTTCG TCAAGGATAT TCATTGCAAC CCGAACGATG CCGCGATTGC CGAGGCCGTC ATTGCACTTG GCCGCTCCTT CTCGCTGAAC GTCATCGCCG AGGGAGTGGA AACCATTGAG CAGCGGGATG CGTTGATCGC ACGGGGCTGC CTGACTTTCC AGGGCTATCT GTTCGGACGC CCCGGCCCGA TTGACGCTTT CCCCGCCTGC CGGCCGCCTC AGCGCAATTC CCAGTAA
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Protein sequence | MRSAKQVTLV TLIRLCIAFG LWLFQPAYAS DSNTVRIGVL AFRDVQATEQ QWSALGAYLT EAIGDHRFIV VPMYLDDLSA AAASGEVDFV LTQPEHYVLL RARHGLAAVT TLTTLAGGQP VSKFGGVIFT RADRSDINSL ANLRGKVVVA THPNSFGSYR IQQWTLLQAG LRLPGDLKQP IFTGPPQDNV IEMVLDGKAD AGFIRTGLIE ALASEGHLDP SRLKLINPQQ VKGFPLLLST ELFPEWPFSA VRDVPEPLIK AVTLALLKIP PDHPVATKGK FHGFSPPADY SGLESVMLEL RAHPDRLEHF DAQDIVDKYS TQVVGGLSTL LILSMLAVAY LIRSKRLVGA ALRERASLLD SLGEGVYGID QNGQCTFINP KALEMLGWTA DEVIGSDQHA RFHHHRPDGS IYPSADCPVY QTLRDGQRRQ GEEWFFNKDG RGFPVQYSVT PISRQEDKEG AVVTFRDISE ARKADELMRI AAIAFETQEA MLVTDAKSQI LRVNRAFTEV TGYSAAEAIG QTPALLKSGY HEDSFYKDLW TSLKENGLWR GEIWNRRKNG EIYPEWLTIS AVRGQHGEIT HFVSSFLDIT KRKEAEEQIQ FLALYDPLTH LPNRRLLNER LSKALTSSGR QRRHAALLFI DLDNFKMIND SMGHDIGDLL LRQVALRLRE SVRSNDTVSR LGGDEFVILL EELSPNIHDA TTQIEHIAQK MLDSLVQPYK FGEFSHHCTA SIGAIPFMDA TETIESLLKS ADMAMYKAKA AGKNRLFFFD PAMQTEVEAR AALERDLRQA QREKQFVLYL QPQVDQSGHV SGAEALIRWQ HPTHGLILPG EFTHVAEETR LILPIGQWVL EEACKQLVIW QKNPDTAHLT LAINVSALQF RNPDFVDDVA RAIHESGALA SRLKLEITES LLLEDIDGTI ERMQVLKNQL GVGLSLDDFG TGYSSLSYLK QLPLDQIKID RSFVKDIHCN PNDAAIAEAV IALGRSFSLN VIAEGVETIE QRDALIARGC LTFQGYLFGR PGPIDAFPAC RPPQRNSQ
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