| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3043 |
|---|
| Symbol | |
|---|
| ID | 3568247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3286626 |
|---|
| End bp | 3287546 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637681514 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_286243 |
|---|
| Protein GI | 71908656 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.15459 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATTA TCCTCGCCAA CCCCCGCGGC TTCTGTGCCG GCGTCGAACG CGCCATCGCC
ATTGTCGAGC GGGCCCTGGA AAAATTCGGC GCCCCGATCT ACGTTCGCCA TGAAGTCGTG
CACAACAAGT TCGTCTGCGA CGACTTGCGG GCCAAGGGGG CGGTTTTTGT CGAGGAACTG
GATGAAGTAC CCGCTGGTAG TACCGTGATC TTCAGCGCCC ATGGTGTTTC CAAAGCAGTC
CGTGAGGATG CTGAAGCACG TGGTCTGAAG GTCTTCGATG CCACCTGCCC GCTGGTCACC
AAGGTGCATG TCGAAGTGGG GAAGATGCGC AACCAGACCC GCGAAGTCGT CATGATCGGG
CATAAGGGAC ACCCCGAGGT CGAAGGGACG ATGGGGCAAA GCCAGGGCGG GATGTATCTG
GTTGAAACGG CCGATGAAGT TGCGCAATTG CAGGTCAGTG ATCCTCTGCA TCTTTCTTTT
GTTACTCAGA CTACTTTGTC GGTCGACGAT GCGACGGTTG TCATTGATGC CCTGAAGCAA
CGCTTTCCCG AGATCCAGGG GCCGAAAAAA GACGATATTT GTTATGCCAC CCAGAACCGG
CAAGATGCGG TCAAGGAATT GGCCGGGAAG TGCGATTTGG TGCTGGTCGT CGGTAGCCCA
AATAGTTCTA ACTCTCGTCG ACTCAAGGAG GTTGCAGTTG GGCGCAATGT GATGGCTTTT
CTGATTGACG ATGCGGAAGA AATTGAAGAG TCGTGGTTAC GGGGAAAGCA GCATATTGGT
GTCACAGCAG GAGCATCAGC GCCGGAGACC CTCGTTGAAC GGGTGGTTAT GCACATCCAG
GCGTTGACTG GAGCTTCCGT CACCCATTTG AAGGGGATAG AGGAAGGGAT CTCTTTCCCT
TTGCCTAAAG ATTTGAACTG A
|
|---|
| Protein sequence | MEIILANPRG FCAGVERAIA IVERALEKFG APIYVRHEVV HNKFVCDDLR AKGAVFVEEL
DEVPAGSTVI FSAHGVSKAV REDAEARGLK VFDATCPLVT KVHVEVGKMR NQTREVVMIG
HKGHPEVEGT MGQSQGGMYL VETADEVAQL QVSDPLHLSF VTQTTLSVDD ATVVIDALKQ
RFPEIQGPKK DDICYATQNR QDAVKELAGK CDLVLVVGSP NSSNSRRLKE VAVGRNVMAF
LIDDAEEIEE SWLRGKQHIG VTAGASAPET LVERVVMHIQ ALTGASVTHL KGIEEGISFP
LPKDLN
|
|---|
| |