| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3006 |
|---|
| Symbol | |
|---|
| ID | 3567319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 3244155 |
|---|
| End bp | 3248837 |
|---|
| Gene Length | 4683 bp |
|---|
| Protein Length | 1560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637681477 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_286206 |
|---|
| Protein GI | 71908619 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.755684 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACCA TGCCCTCCTC CACCCTCGGC GACATCATGA CCAGCGATGT GCGCAGCCTG
CCGCCGCAAG CGACCTTGGA GGATGCCGCC AAACTGATGG CCGCAGAGCA CATTTCCAGC
CTACTGGTGA TCGCCGATGG CGAGGCATTG GGAATCGTCA CCGAAAGCAA TATTCTCCGC
GCCCTGCACG CACGCCAGCC CCGGGAAACC CGACTCGACG TGATCATGTC GCAGCCGCTG
ATCACCGCCC CCAGCGATCT GAACCTGATC AGCGCCCGAC GCCTAGTCGA AGAGCGCAAC
ATCCGGCATC TGGTGGTGAA AAATCCAAAC GGCACCGTCG CCGGCATTGT CAGCGACACC
GATTTCCGCA TCCGTCTTGG CACCGCTGCC TTTCAGCACC TGCGAACGCT GGAAGGCATC
ATGGATCGTC AGATCCCGAA GCTCCCCCCC GATGCCCTAC TCGACCAGGC CATTGCCTGC
ATGGTCAACA ACGCGGCAGA CTATCTGATT GTCAGTAACG ATGACACGCC ACTGGGCATT
CTGACCGAGC GCGACATACC GCGCCTGCTC GACAAATTCC TCACTCCGCA TGACGTCCGC
CTGGGGGAGA CGATGAGTTC CCCCTTGCGC AGCGTCAATG TCGAGATGTC GGTCACCGGC
GCATTGGAGG CAATGAACCG CTTCCACCTC CGGCACATGG TCGTCCTCGA CAATAACGGG
AAAATTCTCG GGGTTGTCAG CCAGCGCCGA CTTTTCGAGC AACTGGCCCT GGAACGACTG
GAAAACGCCC TGCACCAAAT GCAGCAGGAA CGCGATCGCC TTCGCCTGGA GGCACACCTC
CAGTTGGCCC TCGACGTAGC CGGTGCCGGC AGTTGGGAAT ACCAGCACGA TACCGACCGT
CACATTGTCA GCGATGGCGT CCAGGCCTTG CTCGGGTGTA CTCAGGACGA TACCCCGAGA
ACACTGAACG AATGGATGGA ACGTATCCAC CCGGATGACA GGCATCTCCT GGCCACAGCA
GCCAGCGCTG ACCACGGCAA GACCCCGTCA CAAGTCGTCG AATACCGGAT ACGCCATCAG
GACGGGCATT GGATCTGGGT TGAGAATCGT AGCTGTGTCA CCGAGAGGAA TGCCGATGGC
AGCCCGATGG TCACGGCAGG CATCCTCAAT GACATTACCG AACGAGAACT GGCCCGCCAG
CAGATTACCC GACAGAATCG GGCACTTCGC ATGATGACCG CTGTCGCTCA GATTCTCGTC
CGCTACACCG ATGAACAGCA GATGCTTGCC GAAATCTGCA CCGTCGCCGT CGAAGTCGGA
GGCTATATGA TGGCCTGGGT CGGCGAAGCG CGAACTGACG AGAAAAAGAG CATCGTGCCG
ACCGCCGAGT CTGGCCTCAT CGGGGACTAC CTGAAGCAAC TGAACATTAG CTGGGCCGAC
GCGCCCAACG GTCAGGGACC GACTGGTCGT GCCATCCGCA CCGGCGTACC GAGCATCATT
CGCGACACCG AAACTGATCC TTCATTCACC CCTTGGCGAG AAGCGGCCAA AACGCTCGGT
TTTCGCTCGT CAATTGCGCT CCCGCTCCGC GTTGACGGCA GGATCGTCAG CGTCCTCAGC
CTCTATTCGA GCAGCATCGA CCCCTTTGAT GACGACGAAA TCGCCCTGCT CTGCAATCTG
GCCGGCGAAC TCGGCCTTGG CATCGGCATG CAGAGATCCA GGCAGACGCT TGCCCACAGC
GAAGAAATGC TCCTCCAGGC CCAGCGGCTG GCCAGGCTCG GCCATTTCAC TTTCGATGCG
GCGACTGACG TCCTGCGAGG CTCACCAACC CACAACGAAT TATTCGGCAT TGAAGCCGGC
CTCGAAATCG ACACTGATAC CTGGCTGTCA CTGATTCATC CCGAGGACCG CCAGCGCATG
GCCGACTATT CGCGGGATCA CGTTTTTCGT GGCCGACAGC CTTTCGATAC CGAATACCGC
GTCATCCGCC GCAACGATGG CGAAGTCCGC TGGCTGCATG GCGCCGGCCA GATCGAAATT
ACTGCCAATG GCCGGGTGGC CCGCCTTTTC GGAACCAGTC AGGACATCAC CGAACGCAAG
CATTTCGAAC GACGCCTGAG CCGGAACGAA AAGGCGCTGA AGGAAGCCCA GGCCATCGCG
AACTTGGGCA GCTGGACGCT GGATATACTC TCCGACAAGC TGACCTGGAG CGACGAGGTT
TACCGGATAT TCGGCGTAGC CAAGGATCAG CCGCTGAAAC TGGGCGACTT TCTCGCCCGC
ATTCACCCGG ATGACCGTGA CCGAGTCCAG GCCGACTGGA ATGCCGCACT TCAGGGCAGT
CCCTACAACA GCGAACACCG GATCACCGTC GATCAGCAAG TGCGCTGGGT GCGTGAGCGG
GCCCATATCC GCATCGACGA TGAAGGGAGG GCAGCCTTCG CGGTCGGCAC GGTTCAGGAC
GTCACCGAGC GCCACGAAGC CGAAGAACAG TTGCGCAAGC TGTCACTGGC CATCGAGCAG
ACGCCGCACA GTATCGTCAT CACCAACACC GCGGCCAAGA TCGAATACGT CAACGAAGCC
TTTGTCCGCA ACACCGGCTA TTCGCGCAGC GAAGCCATTG GCTCCAATCC GAGCGTGCTG
CACTCCGGAA TGACTCCCGG AGAATCCTAC AACGAGCTGT GGCAAACTTT GGGGCGAGGG
GAAGTCTGGC ATGGTGAATT CATGAACCGG CGCAAGGACG GTTCAATCTA CGAAGAATTT
GCGATCATCT CGCCAGTACG GCAGCCGGAT GGGAAAGTCA CCCACTATCT CGCGATCAAG
GAAGACATCA CCGAGAAAAA ACGCATCCAG TCCGAACTGA ACAGCTACCG TCAGCATCTG
GAGCAACTCG TCGCCGAGCG AACCGAGGAA CTGAACCATG CCAAGGATGA GGCTGAATCG
GCAAGCCGGG CAAAAACAGC ATTCCTGGCC AACATGAGCC ACGAAATCCG GACACCGATG
AATGCAATCA TTGGCCTCAC CCACCTGGCT CAGCGCAGCA CCAGCGATCC GGAACAAAAC
AAGCGCCTCG GCAAAGTCGC GGACGCCGCG CATCATCTGA TGTCCATCAT CAACGACGTA
CTCGATATTT CAAAAATCGA AGCCAACAAA CTGAAACTCG AAAACACCGA TTTTTCGCTG
GCCCAACTCT GCACCGCAGC CTGCGAACTG GTCACCCAGC GCGCCGATGC CAAGCGCCTG
CCGGTGACCT GCATCATTGA CCCGGCACTG CCGCCAGTAC TATGCGGCGA CCCGCTGCGT
ATTCAGCAGA TATTGCTCAA TTTCCTGTCG AACGCCATCA AATTCACCGA GCGCGGCAAG
ATTGACATCC GTGTTCAGGC GCTTCAAAAA TCCGGTGATG GCATCCTGAT CCGCTGCGCA
GTCAGCGACA CTGGCATCGG CATCGCATCA GATGCACAGC GAAAGCTCTT CGTACCCTTC
GAGCAGGGTG ATGCCTCGAC TACCCGGCGC TATGGCGGCA CCGGACTGGG ACTGGCGATC
AGCCGGCGCC TAGCCGAAGC CATGCATGGC GAAATCGGCG TCGACAGCAA ACTAGGGCAA
GGCAGCACCT TCTGGTTCAC CGCTCGGCTA TCTGTCGGCG CAGGCGAGCA AGATGCCGGT
TACGACCAGC CTGCTTCAAC CACACATCAG CTTGGCGCAC ACATCCTGCT GGCCGAGGAC
AATGCAATCA ACGCCGAAGT CGCCAGCGAC TTGCTGCGCG GTGCTGGTCT CAAAGTCGAT
CTGGCCAAAG ACGGGGCCGA AGCCTTGAGC CTCGCTCGCC GGCAACACTA CGACCTGATT
CTGATGGACA TGCAGATGCC GGTCATGGAT GGCCTCGAAG CCACCCGACA GATTCGTACG
CTACCCGGCT GGGGAAAGAT TCCCATCCTG GCGATGACCG CCAATGCCTT TGACGAAGAC
AAGGACACCT GTCTCGCTGC CGGCATGAAC GACCACGTCG CCAAACCTGT CGCGCCGGAC
GTTCTTTTCG CTGCGCTGGC CCGCTGGCTG CCCACTCAGA CAAGCATCCA GATTCCCTCG
ACCGCCCCTC AGAACACCTC CAGTCTGCTC GCGCACATCG GAGGTCTGGA TAGCAATTTT
GGCCTGCGGG CAGTACGCGG CCGCCTGGAT AGCTACCTCC GCCTGCTTGG CAAATTTTCC
GAAAACCATC TCGATGACTT CTCGAGAATT CGCGAGAATC TGGCCAGTGG CAACCTGGAC
GAGGCGCGCC GCCTGGCCCA CTCATTGAAA GGGGTCTCCG CCACGCTGGG GGCAGAGGAC
ATCCAGCAGA CAGCCATGGC CCTTGAATTG GCCATCAAGG AGAGACATCC GACAGAGGCT
ATCGAACCAT TGATCGAGCA GTCGGAAAAA GCCTATCTCT CGCTGCATCA GCAACTGGCC
GCCCTCAAGA TCAACGAACA GGCAAGCGCC AATGTGGGGG ATGCTTCGGC CACAGCCGAC
TTGGTCGAGC ATGTCCGGCG CGAATTGCAG CAGGGTGAAA TCAGTGTCCA GGAACTGGTT
CGCCAGCAAG CCAAAACCTT GCAACAGGTG CTTGGCTCGG CTTACCCGGA ATTTGAAGGA
CTGGTTTCAT CGTTCGACTT CGAAGATGCG TTGATCTTCC TCGACCAGTA TCGAATCAAG
TAA
|
|---|
| Protein sequence | MHTMPSSTLG DIMTSDVRSL PPQATLEDAA KLMAAEHISS LLVIADGEAL GIVTESNILR
ALHARQPRET RLDVIMSQPL ITAPSDLNLI SARRLVEERN IRHLVVKNPN GTVAGIVSDT
DFRIRLGTAA FQHLRTLEGI MDRQIPKLPP DALLDQAIAC MVNNAADYLI VSNDDTPLGI
LTERDIPRLL DKFLTPHDVR LGETMSSPLR SVNVEMSVTG ALEAMNRFHL RHMVVLDNNG
KILGVVSQRR LFEQLALERL ENALHQMQQE RDRLRLEAHL QLALDVAGAG SWEYQHDTDR
HIVSDGVQAL LGCTQDDTPR TLNEWMERIH PDDRHLLATA ASADHGKTPS QVVEYRIRHQ
DGHWIWVENR SCVTERNADG SPMVTAGILN DITERELARQ QITRQNRALR MMTAVAQILV
RYTDEQQMLA EICTVAVEVG GYMMAWVGEA RTDEKKSIVP TAESGLIGDY LKQLNISWAD
APNGQGPTGR AIRTGVPSII RDTETDPSFT PWREAAKTLG FRSSIALPLR VDGRIVSVLS
LYSSSIDPFD DDEIALLCNL AGELGLGIGM QRSRQTLAHS EEMLLQAQRL ARLGHFTFDA
ATDVLRGSPT HNELFGIEAG LEIDTDTWLS LIHPEDRQRM ADYSRDHVFR GRQPFDTEYR
VIRRNDGEVR WLHGAGQIEI TANGRVARLF GTSQDITERK HFERRLSRNE KALKEAQAIA
NLGSWTLDIL SDKLTWSDEV YRIFGVAKDQ PLKLGDFLAR IHPDDRDRVQ ADWNAALQGS
PYNSEHRITV DQQVRWVRER AHIRIDDEGR AAFAVGTVQD VTERHEAEEQ LRKLSLAIEQ
TPHSIVITNT AAKIEYVNEA FVRNTGYSRS EAIGSNPSVL HSGMTPGESY NELWQTLGRG
EVWHGEFMNR RKDGSIYEEF AIISPVRQPD GKVTHYLAIK EDITEKKRIQ SELNSYRQHL
EQLVAERTEE LNHAKDEAES ASRAKTAFLA NMSHEIRTPM NAIIGLTHLA QRSTSDPEQN
KRLGKVADAA HHLMSIINDV LDISKIEANK LKLENTDFSL AQLCTAACEL VTQRADAKRL
PVTCIIDPAL PPVLCGDPLR IQQILLNFLS NAIKFTERGK IDIRVQALQK SGDGILIRCA
VSDTGIGIAS DAQRKLFVPF EQGDASTTRR YGGTGLGLAI SRRLAEAMHG EIGVDSKLGQ
GSTFWFTARL SVGAGEQDAG YDQPASTTHQ LGAHILLAED NAINAEVASD LLRGAGLKVD
LAKDGAEALS LARRQHYDLI LMDMQMPVMD GLEATRQIRT LPGWGKIPIL AMTANAFDED
KDTCLAAGMN DHVAKPVAPD VLFAALARWL PTQTSIQIPS TAPQNTSSLL AHIGGLDSNF
GLRAVRGRLD SYLRLLGKFS ENHLDDFSRI RENLASGNLD EARRLAHSLK GVSATLGAED
IQQTAMALEL AIKERHPTEA IEPLIEQSEK AYLSLHQQLA ALKINEQASA NVGDASATAD
LVEHVRRELQ QGEISVQELV RQQAKTLQQV LGSAYPEFEG LVSSFDFEDA LIFLDQYRIK
|
|---|
| |