Gene Daro_3001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3001 
Symbol 
ID3567314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp3239747 
End bp3240301 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content53% 
IMG OID637681472 
Productoligoribonuclease 
Protein accessionYP_286201 
Protein GI71908614 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value0.217558 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGCA ACGCAAACAA CCTCGTCTGG CTGGACATGG AAATGACGGG CTTGAACCCG 
GATGGCGACC GCATTATCGA AATGGCGATG GTCGTCACCA ACTCCGAACT GGAAATGGTT
GCTGAGTCTC CCTCCTGGGT CGTGCATCAG TCGGACGAAA TCTTGGCTGG CATGGATGAT
TGGAACCAGA AAACCCACGG TCGTTCCGGT CTGATCGACA AGGTCAAGGC ATCGACGATG
AACGAAGCAG CAGTCGAAGC TGAGGCGCTG GAATTTCTGA AGAAATATTC GCTGGTCGGG
CACTCGCCGA TGTGTGGCAA TTCAATCGGC CAGGATCGTC GTTTCATGGC ACGTTACATG
CCAACCCTCG AAGCCTTCTT TCACTACCGG AATCTCGATG TCAGCACGCT GAAAGAGTTG
TGCAAGCGTT GGCAGCCGGA GGTCTATAAA GGCTTCAAGA AGAAGAGCAA GCATACTGCA
ATGGCTGACA TCTACGAGTC CATCGACGAA CTGAAGTATT ACCGGGAACA CTTTTTGGCC
AAGCCTGCTG CTTAA
 
Protein sequence
MAGNANNLVW LDMEMTGLNP DGDRIIEMAM VVTNSELEMV AESPSWVVHQ SDEILAGMDD 
WNQKTHGRSG LIDKVKASTM NEAAVEAEAL EFLKKYSLVG HSPMCGNSIG QDRRFMARYM
PTLEAFFHYR NLDVSTLKEL CKRWQPEVYK GFKKKSKHTA MADIYESIDE LKYYREHFLA
KPAA