Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3001 |
Symbol | |
ID | 3567314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 3239747 |
End bp | 3240301 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637681472 |
Product | oligoribonuclease |
Protein accession | YP_286201 |
Protein GI | 71908614 |
COG category | [A] RNA processing and modification |
COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 0.217558 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAGGCA ACGCAAACAA CCTCGTCTGG CTGGACATGG AAATGACGGG CTTGAACCCG GATGGCGACC GCATTATCGA AATGGCGATG GTCGTCACCA ACTCCGAACT GGAAATGGTT GCTGAGTCTC CCTCCTGGGT CGTGCATCAG TCGGACGAAA TCTTGGCTGG CATGGATGAT TGGAACCAGA AAACCCACGG TCGTTCCGGT CTGATCGACA AGGTCAAGGC ATCGACGATG AACGAAGCAG CAGTCGAAGC TGAGGCGCTG GAATTTCTGA AGAAATATTC GCTGGTCGGG CACTCGCCGA TGTGTGGCAA TTCAATCGGC CAGGATCGTC GTTTCATGGC ACGTTACATG CCAACCCTCG AAGCCTTCTT TCACTACCGG AATCTCGATG TCAGCACGCT GAAAGAGTTG TGCAAGCGTT GGCAGCCGGA GGTCTATAAA GGCTTCAAGA AGAAGAGCAA GCATACTGCA ATGGCTGACA TCTACGAGTC CATCGACGAA CTGAAGTATT ACCGGGAACA CTTTTTGGCC AAGCCTGCTG CTTAA
|
Protein sequence | MAGNANNLVW LDMEMTGLNP DGDRIIEMAM VVTNSELEMV AESPSWVVHQ SDEILAGMDD WNQKTHGRSG LIDKVKASTM NEAAVEAEAL EFLKKYSLVG HSPMCGNSIG QDRRFMARYM PTLEAFFHYR NLDVSTLKEL CKRWQPEVYK GFKKKSKHTA MADIYESIDE LKYYREHFLA KPAA
|
| |